Detail

RLID: RLID00000105
RNA Symbol: HOTAIR
RNA Category: lncRNA
Organism: Homo sapiens
Aliase: HOXAS, HOXC-AS4, HOXC11-AS1, NCRNA00072
Sequence:
Network:
Subcellular Localization:
Localization Tissue Validated Method PMID
Nucleus Embryonic stem cell qRT-PCR|Microarray 22193719
Description: Figure 7: Neuronal lncRNAs act via diverse mechanisms. (A) Quantification of relative expression of lncRNAs in nuclear and cytoplasmic cell fractions. (B) Quantification of changes in hosted miRNAs in response to lncRNA_N2 knockdown. MiRNAs were quantified using Taqman miRNA qPCR. (C-E) RIP of lncRNAs with SUZ12 and REST antibodies. The interaction of HOTAIR with SUZ12 is a known interaction that serves as a positive control (Gupta et al, 2010). * and ** indicate P-values of <0.05 and <0.01, respectively. Data are collected from Figure 7.

Other Subcellular Localization:

RLID Localization Tissue Validated Method PMID
RLID00000104 Nucleus Breast cancer cell qRT-PCR|Chip-seq 21963238
RLID00000106 Nucleus Breast cancer cell In situ hybridization 23133536
RLID00000107 Cytoplasm Breast cancer cell In situ hybridization 23133536
RLID00000108 Nucleus HFF|HLF|HeLa cell Fluorescence in situ hybridization 19571010
RLID00037920 Nucleus Gastric cancer tissues qRT-PCR 26136075
RLID00037921 Cytoplasm Gastric cancer tissues qRT-PCR 26136075
RLID00048479 exosome blood exoRBase
RLID00048480 exosome serum exoRBase 24722995
RLID00048481 exosome serum exoRBase 25099764
RLID00048482 exosome serum exoRBase 27197301