Tutorial
Q1: How to Search
Q2: How to Browse
Q3: How to read search results
Q4: How to read detail page
Q5: How to visualize network
Q6: How to blast
Q7: How to submit data
1. For 'Browse By Localization', a treeview has been constructed to display the hierarchical relationship of RNA subcellular localization, according to the cell component annotations curated in Gene Ontology (GO). Users could browse the database by clicking the name on the left treeview or in the right cell graph. Note that the cell doesn't belong to any organism and only some well-known subcellular localizations with a specific structure have been shown in it.
2. For 'Browse By Organism', users could browse the database by clicking the logo of organism on the right phylogenetic tree or by clicking the name on the left treeview.
3. For 'Browse By RNA Category', there are 9 RNA categories in RNALocate: csRNA (chloroplast RNA), mRNA, miRNA, piRNA, rRNA, snRNA, snoRNA, lncRNA and tRNA. Users could get each entry associated with them by clicking the name on the left treeview or in the right graph.
Browse By Localization
Browse By Organism
Browse By RNA Category
1. RLID: the unique ID owned in RNALocate. RLID format: RLID+ eight sequential number, eg. RLID00000112.
2. RNA Symbol: comes from literature and then be normalized according to NCBI, Ensemble and miRBase
3. RNA Category
4. Organism
5. Aliase: the aliase of RNA symbol
6. Sequence: comes from Refseq, Ensemble, miRBase
7. Homology: comes from HomoloGene and miRBase
8. Network: comes from RAID and StarBase
9. Subcellular Localization
10. Other Subcellular Localization: another subcellular localization entries associated with this RNA
Note: users could click the items with underline or button to get more information about this RNA.
A5: Details have been shown in the following figures: