ncRNADetailInformation

Detail Information
Functional analysis

miRNA name

pre-miRNA

family

pre-miRNA Sequence

mature-miRNA

mature sequence

pre-miRNA description

miR-9

MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000442 hsa-miR-9-3p	AUAAAGCUAGAUAACCGAAAGU
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000442 hsa-miR-9-3p	AUAAAGCUAGAUAACCGAAAGU
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000442 hsa-miR-9-3p	AUAAAGCUAGAUAACCGAAAGU
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000442 hsa-miR-9-3p	AUAAAGCUAGAUAACCGAAAGU
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000442 hsa-miR-9-3p	AUAAAGCUAGAUAACCGAAAGU
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000442 hsa-miR-9-3p	AUAAAGCUAGAUAACCGAAAGU
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000442 hsa-miR-9-3p	AUAAAGCUAGAUAACCGAAAGU
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000442 hsa-miR-9-3p	AUAAAGCUAGAUAACCGAAAGU
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000441 hsa-miR-9-5p	UCUUUGGUUAUCUAGCUGUAUGA
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000442 hsa-miR-9-3p	AUAAAGCUAGAUAACCGAAAGU
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000441 hsa-miR-9-5p	UCUUUGGUUAUCUAGCUGUAUGA
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000442 hsa-miR-9-3p	AUAAAGCUAGAUAACCGAAAGU
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000441 hsa-miR-9-5p	UCUUUGGUUAUCUAGCUGUAUGA
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000442 hsa-miR-9-3p	AUAAAGCUAGAUAACCGAAAGU
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000441 hsa-miR-9-5p	UCUUUGGUUAUCUAGCUGUAUGA
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000442 hsa-miR-9-3p	AUAAAGCUAGAUAACCGAAAGU
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000441 hsa-miR-9-5p	UCUUUGGUUAUCUAGCUGUAUGA
MI0000468	MIPF0000014	GGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGAUUCUCA	MIMAT0000442 hsa-miR-9-3p	AUAAAGCUAGAUAACCGAAAGU

link to database

TargetScanS 6.2 | MicroCosm | microRNA.org | miRNAMap 2.0

Interacted genes from RAID,miRTarBase

NRIP3,EEF2K,SLC35E2,SYNGR2,RUNX1,CUEDC1,MAGEA2B,PDZK1,PQLC3,TGFBI,EP300,FNBP1,STMN1,PPAP2A,CDH1
more » NRIP3,EEF2K,SLC35E2,SYNGR2,RUNX1,CUEDC1,MAGEA2B,PDZK1,PQLC3,TGFBI,EP300,FNBP1,STMN1,PPAP2A,CDH1,SPI1,MLL2,SERAC1,SMARCA1,CCNDBP1,DSP,SLC39A14,SLC25A30,BACE1,BIK,XRN2,MN1,LDLRAP1,BOD1L,VEGFA,NR2E1,TC2N,FOXO1,APBB2,GNAT2,GIP,NTRK3,BCL6,CDH3,SNAI2,VIM,CHMP2B,FERMT1,SYAP1,WNT6,SYNE1,AUH,POGZ,MORF4L1,FOXP2,SEC23IP,KIF1B,SLC2A5,WNT8A,TRRAP,LRRTM1,SOCS5,PMP22,TWISTNB,RHOV,CYP39A1,FLNB,RABGAP1,PIGB,NARF,C3orf64,LINC00483,KIAA0494,HLA-A,RASSF8,E2F7,CERS4,TBC1D9,LIN28A,IREB2,ACADSB,MCC,PPP4R2,ZBED3,MTX3,CCL19,CLDN14,MMP13,PDGFRB,CERS2,TAGLN,MESDC1,CXXC5,SUMF2,DMXL1,CHSY1,SLC30A4,STK3,SNX7,SPTBN1,POU2F1,AKR1B10,RCOR1,ATP11C,ALDH1A3,MYF6,LRP1,NKX2-2,CA13,COL12A1,MYLK,LMNA,ELF3,CAMTA1,FBN2,ONECUT2,CNOT6,TESK2,MYH9,CCND1,PRKD3,REST,SLC22A5,SYNE2,ARHGEF10,FSTL3,ATP6V1C2,CMTM2,ID2,ETS1,LPXN,RCC2,PXDN,IPO7,GPBP1L1,SDC1,SPON2,PTPRK,F2,HN1L,PLEKHB1,OPTN,P4HA2,TRPM7,ABCC1,KLRC1,IDS,SPAG9,ITGB3BP,TBPL1,CD34,NIPA1,RBFOX2,KCNJ15,SLC7A2,PELP1,NMNAT2,SIRT1,ELAVL1,LOC100507246,FAIM,C9orf89,GFOD1,HTR3A,SLC22A3,MDM4,ID4,CDX2,HIST1H4H,NR6A1,ITGB1,TTC7B,NAV1,TCL1B,FRMD4B,AVIL,QARS,PLCB4,EFNA1,ATP7A,FAM46A,NBEA,MSI1,NIN,KLF5,NCOR2,AKR1CL1,FOXO3,KLRK1,UGDH,NFKB1,ATL1,RNF44,ATG10,PRG4,GRN,NFATC3,CAPZA1,IGF2R,PRDM1,RAB34,POU2F2,MAP3K3,KIF1A,HOXC12,CALML5,SYPL1,CCNG1,ZNF407,MAP1B,COLEC12,C7orf31

KEGG pathways enriched for interacted genes

pathway name

pathway description

target genes enrich in pathway

p-value

hsa05200	Pathways in cancer	RUNX1,CCND1,FOXO1,EP300,SPI1,WNT8A,WNT6,ITGB1,VEGFA,ETS1,NFKB1,PDGFRB,CDH1,	1.50E-2
hsa04514	Cell adhesion molecules (CAMs)	CDH3,ITGB1,SDC1,HLA-A,CD34,CDH1,CLDN14,	9.19E-2
hsa05215	Prostate cancer	CCND1,FOXO1,EP300,NFKB1,PDGFRB,	3.34E-1
hsa05221	Acute myeloid leukemia	CCND1,RUNX1,SPI1,NFKB1,	4.50E-1
hsa04916	Melanogenesis	CALML5,EP300,PLCB4,WNT8A,WNT6,	4.66E-1

Gene ontology terms enriched for interacted genes

GO terms

GO terms description

target genes enrich in GO term

p-value

GO:0006357	regulation of transcription from RNA polymerase II promoter	RUNX1,NR2E1,EP300,NFATC3,CDX2,SNAI2,NR6A1,VEGFA,NKX2-2,BCL6,MYF6,NCOR2,PRDM1,FOXO1,MDM4,FOXO3,SPI1,ID2,ONECUT2,FOXP2,ID4,ETS1,POU2F1,NFKB1,SIRT1,	1.79E-5
GO:0045596	negative regulation of cell differentiation	RUNX1,CCND1,NR2E1,CDX2,LIN28A,REST,ITGB1,NKX2-2,ID4,HIST1H4H,BCL6,SOCS5,SIRT1,	2.15E-5
GO:0016481	negative regulation of transcription	NCOR2,NR2E1,PRDM1,PTPRK,MDM4,RBFOX2,SPI1,ID2,CDX2,SNAI2,NR6A1,REST,FOXP2,ID4,POU2F1,NFKB1,BCL6,SIRT1,MYF6,	2.40E-5
GO:0010629	negative regulation of gene expression	NCOR2,PTPRK,NR2E1,PRDM1,MDM4,RBFOX2,SPI1,ID2,CDX2,SNAI2,NR6A1,LIN28A,REST,FOXP2,ID4,POU2F1,NFKB1,BCL6,SIRT1,MYF6,	2.43E-5
GO:0045934	negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	NCOR2,NR2E1,PRDM1,PTPRK,MDM4,RBFOX2,SPI1,ID2,CDX2,SNAI2,NR6A1,REST,FOXP2,ID4,POU2F1,NFKB1,BCL6,SIRT1,MYF6,	9.89E-5

GO:0051172	negative regulation of nitrogen compound metabolic process	NCOR2,NR2E1,PRDM1,PTPRK,MDM4,RBFOX2,SPI1,ID2,CDX2,SNAI2,NR6A1,REST,FOXP2,ID4,POU2F1,NFKB1,BCL6,SIRT1,MYF6,	1.17E-4
GO:0045892	negative regulation of transcription, DNA-dependent	NCOR2,NR2E1,PRDM1,MDM4,SPI1,ID2,CDX2,SNAI2,NR6A1,REST,FOXP2,POU2F1,NFKB1,BCL6,SIRT1,	1.94E-4
GO:0010558	negative regulation of macromolecule biosynthetic process	NCOR2,NR2E1,PRDM1,PTPRK,MDM4,RBFOX2,SPI1,ID2,CDX2,SNAI2,NR6A1,REST,FOXP2,ID4,POU2F1,NFKB1,BCL6,SIRT1,MYF6,	2.25E-4
GO:0051253	negative regulation of RNA metabolic process	NCOR2,NR2E1,PRDM1,MDM4,SPI1,ID2,CDX2,SNAI2,NR6A1,REST,FOXP2,POU2F1,NFKB1,BCL6,SIRT1,	2.30E-4
GO:0031327	negative regulation of cellular biosynthetic process	NCOR2,NR2E1,PRDM1,PTPRK,MDM4,RBFOX2,SPI1,ID2,CDX2,SNAI2,NR6A1,REST,FOXP2,ID4,POU2F1,NFKB1,BCL6,SIRT1,MYF6,	3.05E-4
GO:0009890	negative regulation of biosynthetic process	NCOR2,NR2E1,PRDM1,PTPRK,MDM4,RBFOX2,SPI1,ID2,CDX2,SNAI2,NR6A1,REST,FOXP2,ID4,POU2F1,NFKB1,BCL6,SIRT1,MYF6,	3.94E-4
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	NCOR2,PRDM1,NR2E1,FOXP2,MDM4,ID2,SPI1,NFKB1,CDX2,SNAI2,BCL6,NR6A1,	6.26E-4
GO:0030182	neuron differentiation	SMARCA1,NR2E1,APBB2,SPON2,ATL1,EFNA1,GNAT2,ONECUT2,VEGFA,NKX2-2,ID4,ATP7A,MAP1B,CDH1,NTRK3,	1.50E-2
GO:0045637	regulation of myeloid cell differentiation	RUNX1,FOXO3,ID2,ETS1,SPI1,HIST1H4H,	1.99E-2
GO:0045449	regulation of transcription	SMARCA1,KLF5,CDX2,SNAI2,NR6A1,NKX2-2,XRN2,CERS4,BCL6,MYF6,CERS2,NCOR2,PTPRK,PRDM1,MDM4,RBFOX2,SPI1,ID2,REST,CAMTA1,FOXP2,ONECUT2,ID4,ETS1,POU2F1,TRRAP,NFKB1,POU2F2,POGZ,SIRT1,RUNX1,NR2E1,EP300,NFATC3,LIN28A,ITGB3BP,E2F7,VEGFA,ZNF407,ELF3,HOXC12,CNOT6,FOXO1,FOXO3,APBB2,GPBP1L1,MLL2,MORF4L1,RCOR1,TBPL1,	2.28E-2
GO:0051252	regulation of RNA metabolic process	RUNX1,SMARCA1,NR2E1,KLF5,EP300,NFATC3,CDX2,SNAI2,LIN28A,NR6A1,E2F7,VEGFA,NKX2-2,ELAVL1,CERS4,ELF3,BCL6,MYF6,CERS2,HOXC12,NCOR2,PRDM1,MDM4,FOXO1,FOXO3,ID2,SPI1,MLL2,REST,FOXP2,ONECUT2,ID4,ETS1,POU2F1,NFKB1,POU2F2,SIRT1,TBPL1,	2.38E-2
GO:0032535	regulation of cellular component size	CAPZA1,EP300,SPTBN1,APBB2,XRN2,AVIL,CCNG1,BCL6,SOCS5,MAP1B,NTRK3,	2.56E-2
GO:0042127	regulation of cell proliferation	CCND1,NR2E1,PTPRK,KLF5,FOXO1,MDM4,RBFOX2,ID2,CDX2,PMP22,PPAP2A,ITGB1,E2F7,FOXP2,VEGFA,GRN,ID4,ETS1,BCL6,SIRT1,PDGFRB,	2.56E-2
GO:0010605	negative regulation of macromolecule metabolic process	NCOR2,PTPRK,NR2E1,PRDM1,MDM4,RBFOX2,SPI1,ID2,CDX2,SNAI2,NR6A1,LIN28A,REST,FOXP2,ID4,POU2F1,NFKB1,BCL6,SIRT1,MYF6,	2.68E-2
GO:0045597	positive regulation of cell differentiation	RUNX1,NKX2-2,FOXO3,ID2,ETS1,NFKB1,CDX2,SOCS5,MAP1B,NTRK3,	2.73E-2
GO:0006355	regulation of transcription, DNA-dependent	RUNX1,SMARCA1,NR2E1,KLF5,EP300,NFATC3,CDX2,SNAI2,LIN28A,NR6A1,E2F7,VEGFA,NKX2-2,CERS4,ELF3,BCL6,MYF6,CERS2,HOXC12,NCOR2,PRDM1,MDM4,FOXO1,FOXO3,ID2,SPI1,MLL2,REST,FOXP2,ONECUT2,ID4,ETS1,POU2F1,NFKB1,POU2F2,SIRT1,TBPL1,	3.00E-2
GO:0010628	positive regulation of gene expression	RUNX1,SMARCA1,PRDM1,KLF5,FOXO1,FOXO3,EP300,NFATC3,SPI1,CDX2,ONECUT2,VEGFA,NKX2-2,ETS1,POU2F1,NFKB1,MYF6,	3.19E-2
GO:0043062	extracellular structure organization	APBB2,ATP7A,SERAC1,ELF3,COL12A1,TGFBI,MAP1B,CDH1,	4.97E-2
GO:0007517	muscle organ development	ITGB1,FOXP2,TAGLN,EP300,FLNB,LMNA,SIRT1,MYF6,PDGFRB,	5.79E-2
GO:0045941	positive regulation of transcription	RUNX1,SMARCA1,KLF5,FOXO1,FOXO3,EP300,NFATC3,SPI1,CDX2,ONECUT2,VEGFA,NKX2-2,ETS1,POU2F1,NFKB1,MYF6,	5.87E-2
GO:0042493	response to drug	ALDH1A3,CCND1,CDH3,PDZK1,ABCC1,EP300,SLC22A5,MAP1B,CDH1,	6.63E-2
GO:0008284	positive regulation of cell proliferation	CCND1,NR2E1,KLF5,MDM4,ID2,CDX2,ITGB1,FOXP2,VEGFA,GRN,ID4,BCL6,PDGFRB,	6.97E-2
GO:0045664	regulation of neuron differentiation	REST,NR2E1,NKX2-2,ID4,MAP1B,NTRK3,EFNA1,	7.23E-2
GO:0001701	in utero embryonic development	PRDM1,ITGB1,MYH9,GRN,CDX2,PDGFRB,CDH1,MLL2,	7.49E-2
GO:0009636	response to toxin	ATP7A,SDC1,SLC30A4,MAP1B,CDH1,	7.65E-2
GO:0009891	positive regulation of biosynthetic process	RUNX1,SMARCA1,F2,KLF5,FOXO1,FOXO3,EP300,NFATC3,SPI1,CDX2,ONECUT2,VEGFA,KLRK1,NKX2-2,ETS1,POU2F1,NFKB1,MYF6,	7.77E-2
GO:0045893	positive regulation of transcription, DNA-dependent	RUNX1,SMARCA1,FOXO1,FOXO3,EP300,NFATC3,SPI1,CDX2,ONECUT2,VEGFA,NKX2-2,ETS1,POU2F1,NFKB1,	8.32E-2
GO:0051272	positive regulation of cell motion	ONECUT2,VEGFA,ETS1,BCL6,SPAG9,PDGFRB,	8.42E-2
GO:0051173	positive regulation of nitrogen compound metabolic process	RUNX1,SMARCA1,KLF5,FOXO1,FOXO3,EP300,NFATC3,SPI1,CDX2,ONECUT2,VEGFA,KLRK1,NKX2-2,ETS1,POU2F1,NFKB1,MYF6,	8.44E-2
GO:0045639	positive regulation of myeloid cell differentiation	RUNX1,FOXO3,ID2,ETS1,	8.46E-2
GO:0045665	negative regulation of neuron differentiation	REST,NR2E1,NKX2-2,ID4,	8.46E-2
GO:0051254	positive regulation of RNA metabolic process	RUNX1,SMARCA1,FOXO1,FOXO3,EP300,NFATC3,SPI1,CDX2,ONECUT2,VEGFA,NKX2-2,ETS1,POU2F1,NFKB1,	8.89E-2
GO:0051094	positive regulation of developmental process	RUNX1,NKX2-2,FOXO3,ID2,ETS1,NFKB1,CDX2,SOCS5,MAP1B,NTRK3,	9.53E-2
GO:0010557	positive regulation of macromolecule biosynthetic process	RUNX1,SMARCA1,F2,KLF5,FOXO1,FOXO3,EP300,NFATC3,SPI1,CDX2,ONECUT2,VEGFA,NKX2-2,ETS1,POU2F1,NFKB1,MYF6,	9.70E-2
GO:0048609	reproductive process in a multicellular organism	BIK,FOXO3,TESK2,SLC30A4,LMNA,NR6A1,PPAP2A,ITGB1,VEGFA,XRN2,BCL6,SPAG9,SIRT1,TBPL1,	9.80E-2
GO:0032504	multicellular organism reproduction	BIK,FOXO3,TESK2,SLC30A4,LMNA,NR6A1,PPAP2A,ITGB1,VEGFA,XRN2,BCL6,SPAG9,SIRT1,TBPL1,	9.80E-2
GO:0015697	quaternary ammonium group transport	PDZK1,SLC22A5,SLC22A3,	9.86E-2

KEGG pathways and Gene Ontology terms enriched for the interacted genes of ncRNA from RAID and miRTarBase.

disease name	related genes	p-value