ncRNADetailInformation

Detail Information
Functional analysis

miRNA name

pre-miRNA

family

pre-miRNA Sequence

mature-miRNA

mature sequence

pre-miRNA description

miR-885-3p

MI0005560	MIPF0000532	CCGCACUCUCUCCAUUACACUACCCUGCCUCUUCUCCAUGAGAGGCAGCGGGGUGUAGUGGAUAGAGCACGGGU	MIMAT0004948 hsa-miR-885-3p	AGGCAGCGGGGUGUAGUGGAUA	This sequence was identified as a miRNA candidate by Berezikov et al.using RAKE and MPSS techniques . Expression was later confirmed bycloning .
MI0005560	MIPF0000532	CCGCACUCUCUCCAUUACACUACCCUGCCUCUUCUCCAUGAGAGGCAGCGGGGUGUAGUGGAUAGAGCACGGGU	MIMAT0004948 hsa-miR-885-3p	AGGCAGCGGGGUGUAGUGGAUA	This sequence was identified as a miRNA candidate by Berezikov et al.using RAKE and MPSS techniques . Expression was later confirmed bycloning .
MI0005560	MIPF0000532	CCGCACUCUCUCCAUUACACUACCCUGCCUCUUCUCCAUGAGAGGCAGCGGGGUGUAGUGGAUAGAGCACGGGU	MIMAT0004948 hsa-miR-885-3p	AGGCAGCGGGGUGUAGUGGAUA	This sequence was identified as a miRNA candidate by Berezikov et al.using RAKE and MPSS techniques . Expression was later confirmed bycloning .
MI0005560	MIPF0000532	CCGCACUCUCUCCAUUACACUACCCUGCCUCUUCUCCAUGAGAGGCAGCGGGGUGUAGUGGAUAGAGCACGGGU	MIMAT0004948 hsa-miR-885-3p	AGGCAGCGGGGUGUAGUGGAUA	This sequence was identified as a miRNA candidate by Berezikov et al.using RAKE and MPSS techniques . Expression was later confirmed bycloning .
MI0005560	MIPF0000532	CCGCACUCUCUCCAUUACACUACCCUGCCUCUUCUCCAUGAGAGGCAGCGGGGUGUAGUGGAUAGAGCACGGGU	MIMAT0004948 hsa-miR-885-3p	AGGCAGCGGGGUGUAGUGGAUA	This sequence was identified as a miRNA candidate by Berezikov et al.using RAKE and MPSS techniques . Expression was later confirmed bycloning .
MI0005560	MIPF0000532	CCGCACUCUCUCCAUUACACUACCCUGCCUCUUCUCCAUGAGAGGCAGCGGGGUGUAGUGGAUAGAGCACGGGU	MIMAT0004948 hsa-miR-885-3p	AGGCAGCGGGGUGUAGUGGAUA	This sequence was identified as a miRNA candidate by Berezikov et al.using RAKE and MPSS techniques . Expression was later confirmed bycloning .
MI0005560	MIPF0000532	CCGCACUCUCUCCAUUACACUACCCUGCCUCUUCUCCAUGAGAGGCAGCGGGGUGUAGUGGAUAGAGCACGGGU	MIMAT0004948 hsa-miR-885-3p	AGGCAGCGGGGUGUAGUGGAUA	This sequence was identified as a miRNA candidate by Berezikov et al.using RAKE and MPSS techniques . Expression was later confirmed bycloning .
MI0005560	MIPF0000532	CCGCACUCUCUCCAUUACACUACCCUGCCUCUUCUCCAUGAGAGGCAGCGGGGUGUAGUGGAUAGAGCACGGGU	MIMAT0004948 hsa-miR-885-3p	AGGCAGCGGGGUGUAGUGGAUA	This sequence was identified as a miRNA candidate by Berezikov et al.using RAKE and MPSS techniques . Expression was later confirmed bycloning .
MI0005560	MIPF0000532	CCGCACUCUCUCCAUUACACUACCCUGCCUCUUCUCCAUGAGAGGCAGCGGGGUGUAGUGGAUAGAGCACGGGU	MIMAT0004948 hsa-miR-885-3p	AGGCAGCGGGGUGUAGUGGAUA	This sequence was identified as a miRNA candidate by Berezikov et al.using RAKE and MPSS techniques . Expression was later confirmed bycloning .
MI0005560	MIPF0000532	CCGCACUCUCUCCAUUACACUACCCUGCCUCUUCUCCAUGAGAGGCAGCGGGGUGUAGUGGAUAGAGCACGGGU	MIMAT0004948 hsa-miR-885-3p	AGGCAGCGGGGUGUAGUGGAUA	This sequence was identified as a miRNA candidate by Berezikov et al.using RAKE and MPSS techniques . Expression was later confirmed bycloning .

link to database

TargetScanS 6.2 | MicroCosm | microRNA.org | miRNAMap 2.0

Interacted genes from RAID,miRTarBase

RPL7L1,SKI,GTF2I,P2RY11,ND3,MED12,LMAN2,GTF2H2C,SGPP2,E4F1,RNF187,MEF2D,ATG2B,ARF5,UBB
more » RPL7L1,SKI,GTF2I,P2RY11,ND3,MED12,LMAN2,GTF2H2C,SGPP2,E4F1,RNF187,MEF2D,ATG2B,ARF5,UBB,PLSCR1,NFE2L1,ITM2B,ZNF367,SPIRE1,TTC38,UBA2,AKT1,COQ2,EIF2C2,GNAL,TPPP3,FAM171B,GXYLT1,RPS6,AP2B1,PPM1A,SRSF10,GDE1,TYMS,DHCR24,ATG16L2,EIF5A,ZBTB4,ADCY9,COL4A1,EXTL3,AKAP2,RAD51C,CBWD1,SEC13,NDUFA2,APEX1,ORC5,CERS1,UQCR10,HADHB,SNRNP200,JPH1,DDX46,PSMA2,MTOR,CIRH1A,VPS45,FGFR3,ATG13,METTL23,GLUD1,TUBG1,RCN2,DDX3X,DDX42,COX2,RAVER2,NDE1,DDX18,MON1B,SALL2,NPM3,N6AMT1,LRIG3,TNRC6B,TRIB1,DDHD1,RARS,CCDC6,MAPK6,SUDS3,RPL37A,FOXRED2,DOCK11,RB1,IGF1R,TOMM22,GTF2H1,MRPS33,POLR2E,CTC1,ATP5E,ATP1A1,CAPNS1,MDM4,WHAMM,DLD,ATG9A,ULK2,SERPINE1,ADO,MYL2,RUNDC3B,RASAL2,FOSL2,PUM1,CUL3,DNAJA3,RPL36A,SRPK1,POGK,MARK2,GOLGA3,NFU1,STEAP4,CLTC,RPS26,RPS15,GPR126,BCL2,N4BP2,TMEM209,ORMDL1,SYNJ2BP,MCM8,EIF2C1,BRD7

KEGG pathways enriched for interacted genes

pathway name

pathway description

target genes enrich in pathway

p-value

hsa05012	Parkinson's disease	UQCR10,ND3,COX2,NDUFA2,UBB,ATP5E,	1.37E-1
hsa05016	Huntington's disease	AP2B1,POLR2E,UQCR10,CLTC,COX2,NDUFA2,ATP5E,	1.46E-1
hsa03010	Ribosome	RPL36A,RPS26,RPL37A,RPS15,RPS6,	1.58E-1
hsa05215	Prostate cancer	IGF1R,BCL2,RB1,AKT1,MTOR,	1.71E-1
hsa04150	mTOR signaling pathway	ULK2,AKT1,RPS6,MTOR,	2.00E-1

Gene ontology terms enriched for interacted genes

GO terms

GO terms description

target genes enrich in GO term

p-value

GO:0010608	posttranscriptional regulation of gene expression	BCL2,EIF2C2,PUM1,MDM4,EIF5A,EIF2C1,DNAJA3,AKT1,TNRC6B,MTOR,	3.01E-5
GO:0006412	translation	RPL36A,MRPS33,RARS,EIF2C2,EIF5A,RPS26,UBB,RPL37A,RPS15,RPS6,RPL7L1,	1.94E-4
GO:0006417	regulation of translation	EIF2C2,PUM1,EIF5A,EIF2C1,AKT1,TNRC6B,MTOR,	5.87E-4
GO:0042127	regulation of cell proliferation	BCL2,MDM4,FOSL2,CAPNS1,RB1,DNAJA3,TRIB1,FGFR3,SERPINE1,MTOR,DHCR24,IGF1R,CUL2,CUL3,EIF5A,SKI,	7.89E-4
GO:0042773	ATP synthesis coupled electron transport	UQCR10,ND3,DLD,COX2,NDUFA2,	8.28E-4

GO:0000082	G1/S transition of mitotic cell cycle	BCL2,CUL2,CUL3,RB1,AKT1,	8.28E-4
GO:0042775	mitochondrial ATP synthesis coupled electron transport	UQCR10,ND3,DLD,COX2,NDUFA2,	8.28E-4
GO:0006119	oxidative phosphorylation	UQCR10,ND3,DLD,COX2,NDUFA2,ATP5E,	8.61E-4
GO:0016310	phosphorylation	SRPK1,UQCR10,BCL2,DLD,TRIB1,AKT1,FGFR3,MTOR,IGF1R,ND3,ULK2,NDUFA2,COX2,MARK2,MAPK6,ATP5E,	9.32E-4
GO:0008361	regulation of cell size	MYL2,BCL2,N6AMT1,RB1,AKT1,FGFR3,MTOR,EXTL3,	9.33E-4
GO:0006414	translational elongation	RPL36A,RPS26,UBB,RPL37A,RPS15,RPS6,	9.86E-4
GO:0022402	cell cycle process	BCL2,MDM4,TUBG1,E4F1,RB1,UBB,AKT1,PSMA2,DHCR24,CUL2,CUL3,NDE1,RAD51C,	1.09E-2
GO:0043086	negative regulation of catalytic activity	DHCR24,ADCY9,RB1,UBB,DNAJA3,TRIB1,AKT1,PSMA2,GNAL,	1.16E-2
GO:0022904	respiratory electron transport chain	UQCR10,ND3,DLD,COX2,NDUFA2,	1.36E-2
GO:0006367	transcription initiation from RNA polymerase II promoter	GTF2H1,POLR2E,MED12,GTF2H2C,GTF2I,	1.71E-2
GO:0007049	cell cycle	BCL2,MDM4,TUBG1,E4F1,RB1,UBB,AKT1,PSMA2,DHCR24,CUL2,CUL3,NDE1,MAPK6,MCM8,RAD51C,	2.00E-2
GO:0006796	phosphate metabolic process	SRPK1,UQCR10,BCL2,DLD,TRIB1,AKT1,FGFR3,MTOR,IGF1R,PPM1A,ND3,ULK2,NDUFA2,COX2,MARK2,MAPK6,ATP5E,	2.44E-2
GO:0006793	phosphorus metabolic process	SRPK1,UQCR10,BCL2,DLD,TRIB1,AKT1,FGFR3,MTOR,IGF1R,PPM1A,ND3,ULK2,NDUFA2,COX2,MARK2,MAPK6,ATP5E,	2.44E-2
GO:0032268	regulation of cellular protein metabolic process	BCL2,EIF2C2,PUM1,EIF5A,EIF2C1,UBB,DNAJA3,AKT1,TNRC6B,MTOR,PSMA2,	3.03E-2
GO:0006352	transcription initiation	GTF2H1,POLR2E,MED12,GTF2H2C,GTF2I,	3.54E-2
GO:0044092	negative regulation of molecular function	DHCR24,ADCY9,RB1,UBB,DNAJA3,TRIB1,AKT1,PSMA2,GNAL,	3.72E-2
GO:0046907	intracellular transport	TOMM22,BCL2,GOLGA3,AKT1,RPS15,AP2B1,VPS45,PUM1,EIF5A,CLTC,NDE1,SEC13,SRSF10,	3.84E-2
GO:0008284	positive regulation of cell proliferation	IGF1R,BCL2,MDM4,FOSL2,CAPNS1,EIF5A,CUL3,DNAJA3,FGFR3,MTOR,	4.01E-2
GO:0065003	macromolecular complex assembly	SNRNP200,TOMM22,POLR2E,MED12,MDM4,TUBG1,RPS15,GTF2H1,IGF1R,GTF2H2C,SKI,GTF2I,SRSF10,	4.23E-2
GO:0032535	regulation of cellular component size	MYL2,BCL2,N6AMT1,RB1,AKT1,FGFR3,MTOR,EXTL3,	4.38E-2
GO:0015980	energy derivation by oxidation of organic compounds	UQCR10,ND3,DLD,COX2,NDUFA2,AKT1,	4.64E-2
GO:0045333	cellular respiration	UQCR10,ND3,DLD,COX2,NDUFA2,	6.17E-2
GO:0006351	transcription, DNA-dependent	GTF2H1,POLR2E,NFE2L1,MED12,NPM3,APEX1,GTF2H2C,GTF2I,	6.55E-2
GO:0045792	negative regulation of cell size	MYL2,BCL2,RB1,AKT1,MTOR,	6.63E-2
GO:0000278	mitotic cell cycle	BCL2,CUL2,CUL3,NDE1,E4F1,RB1,UBB,AKT1,PSMA2,	6.82E-2
GO:0032774	RNA biosynthetic process	GTF2H1,POLR2E,NFE2L1,MED12,NPM3,APEX1,GTF2H2C,GTF2I,	7.04E-2
GO:0043933	macromolecular complex subunit organization	SNRNP200,TOMM22,POLR2E,MED12,MDM4,TUBG1,RPS15,GTF2H1,IGF1R,GTF2H2C,SKI,GTF2I,SRSF10,	7.06E-2
GO:0051329	interphase of mitotic cell cycle	BCL2,CUL2,CUL3,RB1,AKT1,	7.61E-2
GO:0032270	positive regulation of cellular protein metabolic process	BCL2,EIF5A,UBB,DNAJA3,AKT1,MTOR,PSMA2,	8.35E-2
GO:0051325	interphase	BCL2,CUL2,CUL3,RB1,AKT1,	8.41E-2
GO:0006366	transcription from RNA polymerase II promoter	GTF2H1,POLR2E,NFE2L1,MED12,APEX1,GTF2H2C,GTF2I,	8.52E-2

KEGG pathways and Gene Ontology terms enriched for the interacted genes of ncRNA from RAID and miRTarBase.

disease name	related genes	p-value