ncRNADetailInformation

Detail Information
Functional analysis

miRNA name

pre-miRNA

family

pre-miRNA Sequence

mature-miRNA

mature sequence

pre-miRNA description

miR-30d

MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0000245 hsa-miR-30d-5p	UGUAAACAUCCCCGACUGGAAG
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0004551 hsa-miR-30d-3p	CUUUCAGUCAGAUGUUUGCUGC
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0000245 hsa-miR-30d-5p	UGUAAACAUCCCCGACUGGAAG
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0004551 hsa-miR-30d-3p	CUUUCAGUCAGAUGUUUGCUGC
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0000245 hsa-miR-30d-5p	UGUAAACAUCCCCGACUGGAAG
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0004551 hsa-miR-30d-3p	CUUUCAGUCAGAUGUUUGCUGC
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0000245 hsa-miR-30d-5p	UGUAAACAUCCCCGACUGGAAG
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0004551 hsa-miR-30d-3p	CUUUCAGUCAGAUGUUUGCUGC
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0000245 hsa-miR-30d-5p	UGUAAACAUCCCCGACUGGAAG
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0004551 hsa-miR-30d-3p	CUUUCAGUCAGAUGUUUGCUGC
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0000245 hsa-miR-30d-5p	UGUAAACAUCCCCGACUGGAAG
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0004551 hsa-miR-30d-3p	CUUUCAGUCAGAUGUUUGCUGC
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0000245 hsa-miR-30d-5p	UGUAAACAUCCCCGACUGGAAG
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0004551 hsa-miR-30d-3p	CUUUCAGUCAGAUGUUUGCUGC
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0000245 hsa-miR-30d-5p	UGUAAACAUCCCCGACUGGAAG
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0004551 hsa-miR-30d-3p	CUUUCAGUCAGAUGUUUGCUGC
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0000245 hsa-miR-30d-5p	UGUAAACAUCCCCGACUGGAAG
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0004551 hsa-miR-30d-3p	CUUUCAGUCAGAUGUUUGCUGC
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0000245 hsa-miR-30d-5p	UGUAAACAUCCCCGACUGGAAG
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0000245 hsa-miR-30d-5p	UGUAAACAUCCCCGACUGGAAG
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0000245 hsa-miR-30d-5p	UGUAAACAUCCCCGACUGGAAG
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0000245 hsa-miR-30d-5p	UGUAAACAUCCCCGACUGGAAG
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0000245 hsa-miR-30d-5p	UGUAAACAUCCCCGACUGGAAG
MI0000255	MIPF0000005	GUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUAC	MIMAT0000245 hsa-miR-30d-5p	UGUAAACAUCCCCGACUGGAAG

link to database

TargetScanS 6.2 | MicroCosm | microRNA.org | miRNAMap 2.0

Interacted genes from RAID,miRTarBase

SMAD1,NMT1,POLR3H,HOXA11,ATG2B,EZH2,SRSF9,ITGB3,FKTN,ADAP2,RUNX2,TP53,RPS17,BCL6,GALNTL2
more » SMAD1,NMT1,POLR3H,HOXA11,ATG2B,EZH2,SRSF9,ITGB3,FKTN,ADAP2,RUNX2,TP53,RPS17,BCL6,GALNTL2,EIF2C2,HAGH,RPLP0,UBE2I,IRF2,RREB1,MTHFD2,KLF14,ZBTB4,FEM1B,MAZ,LIN28A,MACF1,ZNF609,RAB35,COPS7A,HNRNPH1,SGTA,ADC,C10orf137,MCL1,RPUSD4,CARS2,FBN2,SENP2,MAP4K4,MED28,MSL2,DENND5A,ATG12,FAM60A,ATP1A1,EXOC2,GALNT7,DROSHA,GNAI2,KCTD12,ZNF227,SLC27A1,ATG5,REXO1,CASP3,BECN1,TAF1C,YKT6,FNIP1,SMEK1,RPN2,TAB1,HDHD3,CAMKV,EIF2C1,GPR78,SAMD4B,MAP1B,HSPA1B

KEGG pathways enriched for interacted genes

pathway name

pathway description

target genes enrich in pathway

p-value

hsa04140	Regulation of autophagy	ATG12,BECN1,ATG5,	1.34E-1
hsa04010	MAPK signaling pathway	HSPA1B,MAP4K4,TAB1,CASP3,TP53,	4.46E-1

Gene ontology terms enriched for interacted genes

GO terms

GO terms description

target genes enrich in GO term

p-value

GO:0031047	gene silencing by RNA	EIF2C2,EIF2C1,DROSHA,LIN28A,SMAD1,	1.13E-5
GO:0035195	gene silencing by miRNA	EIF2C2,EIF2C1,LIN28A,SMAD1,	4.87E-5
GO:0016441	posttranscriptional gene silencing	EIF2C2,EIF2C1,LIN28A,SMAD1,	9.41E-5
GO:0035194	posttranscriptional gene silencing by RNA	EIF2C2,EIF2C1,LIN28A,SMAD1,	9.41E-5
GO:0016458	gene silencing	EIF2C2,EIF2C1,DROSHA,LIN28A,SMAD1,	9.46E-5

GO:0010605	negative regulation of macromolecule metabolic process	RUNX2,IRF2,EIF2C2,EIF2C1,DROSHA,UBE2I,ITGB3,BCL6,LIN28A,ATG5,SMAD1,TP53,	2.44E-4
GO:0010629	negative regulation of gene expression	RUNX2,IRF2,EIF2C2,EIF2C1,DROSHA,UBE2I,BCL6,LIN28A,SMAD1,TP53,	2.69E-4
GO:0045165	cell fate commitment	RUNX2,HOXA11,SMAD1,CASP3,TP53,MCL1,	3.15E-4
GO:0009267	cellular response to starvation	ATG12,BECN1,ATG5,TP53,	3.39E-4
GO:0042594	response to starvation	ATG12,BECN1,ATG5,TP53,	7.62E-4
GO:0031669	cellular response to nutrient levels	ATG12,BECN1,ATG5,TP53,	8.74E-4
GO:0035196	gene silencing by miRNA, production of miRNAs	EIF2C2,LIN28A,SMAD1,	1.15E-2
GO:0000045	autophagic vacuole formation	ATG12,BECN1,ATG5,	1.15E-2
GO:0031050	dsRNA fragmentation	EIF2C2,LIN28A,SMAD1,	1.36E-2
GO:0031667	response to nutrient levels	ATG12,GNAI2,BECN1,MAP1B,ATG5,TP53,	1.52E-2
GO:0016236	macroautophagy	ATG12,BECN1,ATG5,	1.59E-2
GO:0006350	transcription	EZH2,RUNX2,IRF2,EIF2C2,NR2F6,HOXA11,EIF2C1,MED28,KLF14,ZBTB4,TP53,C10orf137,ZNF227,POLR3H,RREB1,TAF1C,MAZ,BCL6,SMAD1,	2.26E-2
GO:0009991	response to extracellular stimulus	ATG12,GNAI2,BECN1,MAP1B,ATG5,TP53,	2.47E-2
GO:0031668	cellular response to extracellular stimulus	ATG12,BECN1,ATG5,TP53,	2.58E-2
GO:0006401	RNA catabolic process	HSPA1B,EIF2C1,DROSHA,LIN28A,	2.70E-2
GO:0009890	negative regulation of biosynthetic process	RUNX2,IRF2,EIF2C2,EIF2C1,UBE2I,ITGB3,ATP1A1,BCL6,TP53,	2.91E-2
GO:0043066	negative regulation of apoptosis	HSPA1B,BECN1,BCL6,ATG5,CASP3,TP53,MCL1,	3.96E-2
GO:0043069	negative regulation of programmed cell death	HSPA1B,BECN1,BCL6,ATG5,CASP3,TP53,MCL1,	4.24E-2
GO:0060548	negative regulation of cell death	HSPA1B,BECN1,BCL6,ATG5,CASP3,TP53,MCL1,	4.29E-2
GO:0040029	regulation of gene expression, epigenetic	EIF2C2,EIF2C1,LIN28A,SMAD1,	4.36E-2
GO:0043331	response to dsRNA	EIF2C2,LIN28A,SMAD1,	5.08E-2
GO:0010558	negative regulation of macromolecule biosynthetic process	RUNX2,IRF2,EIF2C2,EIF2C1,UBE2I,ITGB3,BCL6,TP53,	8.57E-2
GO:0031327	negative regulation of cellular biosynthetic process	RUNX2,IRF2,EIF2C2,EIF2C1,UBE2I,ATP1A1,BCL6,TP53,	9.77E-2

KEGG pathways and Gene Ontology terms enriched for the interacted genes of ncRNA from RAID and miRTarBase.

disease name	related genes	p-value