Basic Information:

  VIRBase ID:  

VHID00504576

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:  MIMAT0001581          NPAT:  NM_001321307     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-5p	NPAT
miRBase Accession/Entrez ID	MIMAT0001581	4863
Organism	Human herpesvirus 5 strain AD169	Homo sapiens
Category	miRNA	mRNA
Alias	-	E14//E14/NPAT//p220

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NPAT	chr11:108052068(-) A-I      intronic chr11:108049578(-) A-I      intronic chr11:108048626(-) A-I      intronic chr11:108036947(-) A-I      intronic chr11:108031424(-) A-I      intronic chr11:108058126(-) A-I      intronic chr11:108058129(-) A-I      intronic chr11:108031449(-) A-I      intronic chr11:108031457(-) A-I      intronic chr11:108058132(-) A-I      intronic chr11:108058133(-) A-I      intronic chr11:108058135(-) A-I      intronic chr11:108058141(-) A-I      intronic chr11:108058143(-) A-I      intronic chr11:108082213(-) A-I      intronic chr11:108082012(-) A-I      intronic chr11:108081802(-) A-I      intronic chr11:108058127(-) A-I      intronic chr11:108056904(-) A-I      intronic chr11:108052071(-) A-I      intronic chr11:108048667(-) A-I      intronic chr11:108048651(-) A-I      intronic chr11:108048625(-) A-I      intronic chr11:108048623(-) A-I      intronic chr11:108079301(-) A-I      intronic chr11:108048090(-) A-I      intronic chr11:108048006(-) A-I      intronic chr11:108058079(-) A-I      intronic chr11:108053912(-) A-I      intronic chr11:108053839(-) A-I      intronic chr11:108053822(-) A-I      intronic chr11:108079171(-) A-I      intronic chr11:108088711(-) A-I      intronic chr11:108088598(-) A-I      intronic chr11:108088535(-) A-I      intronic chr11:108048005(-) A-I      intronic chr11:108036971(-) A-I      intronic chr11:108084911(-) A-I      intronic chr11:108084889(-) A-I      intronic chr11:108084887(-) A-I      intronic chr11:108036110(-) A-I      intronic chr11:108084712(-) A-I      intronic chr11:108084707(-) A-I      intronic chr11:108055009(-) A-I      intronic chr11:108084676(-) A-I      intronic chr11:108076116(-) A-I      intronic chr11:108035747(-) A-I      intronic chr11:108053738(-) A-I      intronic chr11:108053463(-) A-I      intronic chr11:108035656(-) A-I      intronic chr11:108088528(-) A-I      intronic chr11:108036455(-) A-I      intronic chr11:108036425(-) A-I      intronic chr11:108053369(-) A-I      intronic chr11:108035655(-) A-I      intronic chr11:108053365(-) A-I      intronic chr11:108035651(-) A-I      intronic chr11:108055554(-) A-I      intronic chr11:108055288(-) A-I      intronic chr11:108082537(-) A-I      intronic chr11:108053362(-) A-I      intronic chr11:108053267(-) A-I      intronic chr11:108082527(-) A-I      intronic chr11:108053330(-) A-I      intronic chr11:108082511(-) A-I      intronic chr11:108055017(-) A-I      intronic chr11:108079289(-) A-I      intronic chr11:108082663(-) A-I      intronic chr11:108037036(-) A-I      intronic chr11:108079220(-) A-I      intronic chr11:108079214(-) A-I      intronic chr11:108035638(-) A-I      intronic chr11:108035494(-) A-I      intronic chr11:108048113(-) A-I      intronic chr11:108079203(-) A-I      intronic chr11:108079197(-) A-I      intronic chr11:108079193(-) A-I      intronic chr11:108079112(-) A-I      intronic chr11:108079101(-) A-I      intronic chr11:108076672(-) A-I      intronic chr11:108076066(-) A-I      intronic chr11:108048132(-) A-I      intronic chr11:108050239(-) A-I      intronic chr11:108051008(-) A-I      intronic chr11:108076578(-) A-I      intronic chr11:108076152(-) A-I      intronic chr11:108054446(-) A-I      intronic chr11:108084793(-) A-I      intronic chr11:108076148(-) A-I      intronic chr11:108065509(-) A-I      intronic chr11:108054311(-) A-I      intronic chr11:108049359(-) A-I      intronic chr11:108057023(-) A-I      intronic chr11:108076203(-) A-I      intronic chr11:108048531(-) A-I      intronic chr11:108048572(-) A-I      intronic chr11:108056882(-) A-I      intronic chr11:108056828(-) A-I      intronic chr11:108052116(-) A-I      intronic chr11:108049502(-) A-I      intronic chr11:108056812(-) A-I      intronic chr11:108056806(-) A-I      intronic chr11:108076770(-) A-I      intronic chr11:108079253(-) A-I      intronic chr11:108052025(-) A-I      intronic chr11:108048707(-) A-I      intronic chr11:108055075(-) A-I      intronic chr11:108055197(-) A-I      intronic chr11:108085632(-) A-I      intronic chr11:108054617(-) A-I      intronic chr11:108055155(-) A-I      intronic chr11:108079191(-) A-I      intronic chr11:108055090(-) A-I      intronic chr11:108052073(-) A-I      intronic chr11:108052028(-) A-I      intronic chr11:108055099(-) A-I      intronic chr11:108084854(-) A-I      intronic chr11:108082555(-) A-I      intronic chr11:108055077(-) A-I      intronic chr11:108082208(-) A-I      intronic chr11:108050852(-) A-I      intronic chr11:108054977(-) A-I      intronic chr11:108054576(-) A-I      intronic chr11:108054445(-) A-I      intronic chr11:108049340(-) A-I      intronic chr11:108079314(-) A-I      intronic chr11:108036499(-) A-I      intronic chr11:108053335(-) A-I      intronic chr11:108054366(-) A-I      intronic chr11:108049326(-) A-I      intronic chr11:108036979(-) A-I      intronic chr11:108054337(-) A-I      intronic chr11:108054284(-) A-I      intronic chr11:108048733(-) A-I      intronic chr11:108053995(-) A-I      intronic chr11:108048712(-) A-I      intronic chr11:108053965(-) A-I      intronic chr11:108054572(-) A-I      intronic chr11:108034034(-) A-I      intronic chr11:108079309(-) A-I      intronic chr11:108055087(-) A-I      intronic chr11:108036246(-) A-I      intronic chr11:108079134(-) A-I      intronic chr11:108082596(-) A-I      intronic chr11:108054578(-) A-I      intronic chr11:108049341(-) A-I      intronic chr11:108054600(-) A-I      intronic chr11:108076214(-) A-I      intronic chr11:108056976(-) A-I      intronic chr11:108079100(-) A-I      intronic chr11:108082146(-) A-I      intronic chr11:108036783(-) A-I      intronic chr11:108084809(-) A-I      intronic chr11:108082564(-) A-I      intronic chr11:108055550(-) A-I      intronic chr11:108052186(-) A-I      intronic chr11:108051946(-) A-I      intronic chr11:108050862(-) A-I      intronic chr11:108082264(-) A-I      intronic chr11:108076238(-) A-I      intronic chr11:108045444(-) A-I      intronic chr11:108075998(-) A-I      intronic chr11:108076663(-) A-I      intronic chr11:108076054(-) A-I      intronic chr11:108058097(-) A-I      intronic chr11:108054520(-) A-I      intronic chr11:108081824(-) A-I      intronic chr11:108055395(-) A-I      intronic chr11:108031446(-) A-I      intronic chr11:108052170(-) A-I      intronic chr11:108088644(-) A-I      intronic chr11:108054954(-) A-I      intronic chr11:108054009(-) A-I      intronic chr11:108036476(-) A-I      intronic chr11:108048178(-) A-I      intronic chr11:108053490(-) A-I      intronic chr11:108082528(-) A-I      intronic chr11:108066493(-) A-I      intronic chr11:108054272(-) A-I      intronic chr11:108065844(-) A-I      intronic chr11:108065514(-) A-I      intronic chr11:108076650(-) A-I      intronic chr11:108045525(-) A-I      intronic chr11:108080602(-) A-I      intronic chr11:108053972(-) A-I      intronic chr11:108050248(-) A-I      intronic chr11:108084693(-) A-I      intronic chr11:108049342(-) A-I      intronic chr11:108050083(-) A-I      intronic chr11:108084896(-) A-I      intronic chr11:108050882(-) A-I      intronic chr11:108050803(-) A-I      intronic chr11:108082565(-) A-I      intronic chr11:108030245(-) A-I      intronic chr11:108048532(-) A-I      intronic chr11:108050939(-) A-I      intronic chr11:108053913(-) A-I      intronic chr11:108084743(-) A-I      intronic chr11:108035594(-) A-I      intronic chr11:108048166(-) A-I      intronic chr11:108054356(-) A-I      intronic chr11:108036477(-) A-I      intronic chr11:108052109(-) A-I      intronic chr11:108055530(-) A-I      intronic chr11:108033250(-) A-I      intronic chr11:108063543(-) A-I      intronic chr11:108031445(-) A-I      intronic chr11:108079113(-) A-I      intronic chr11:108054588(-) A-I      intronic chr11:108036426(-) A-I      intronic chr11:108084869(-) A-I      intronic chr11:108056999(-) A-I      intronic chr11:108055372(-) A-I      intronic chr11:108053385(-) A-I      intronic chr11:108055185(-) A-I      intronic chr11:108049477(-) A-I      intronic chr11:108053836(-) A-I      intronic chr11:108076142(-) A-I      intronic chr11:108052019(-) A-I      intronic chr11:108035751(-) A-I      intronic chr11:108049517(-) A-I      intronic chr11:108082148(-) A-I      intronic chr11:108081780(-) A-I      intronic chr11:108084729(-) A-I      intronic chr11:108076567(-) A-I      intronic chr11:108050824(-) A-I      intronic chr11:108053933(-) A-I      intronic chr11:108037085(-) A-I      intronic chr11:108035686(-) A-I      intronic chr11:108049328(-) A-I      intronic chr11:108055034(-) A-I      intronic chr11:108031467(-) A-I      intronic chr11:108055331(-) A-I      intronic chr11:108035547(-) A-I      intronic chr11:108088714(-) A-I      intronic chr11:108036018(-) A-I      intronic chr11:108036997(-) A-I      intronic chr11:108051934(-) A-I      intronic chr11:108054943(-) A-I      intronic chr11:108036989(-) A-I      intronic chr11:108035755(-) A-I      intronic chr11:108055531(-) A-I      intronic chr11:108050809(-) A-I      intronic chr11:108046733(-) A-I      intronic chr11:108037019(-) A-I      intronic chr11:108050932(-) A-I      intronic chr11:108085633(-) A-I      intronic chr11:108055136(-) A-I      intronic chr11:108036785(-) A-I      intronic chr11:108065488(-) A-I      intronic chr11:108048734(-) A-I      intronic chr11:108082126(-) A-I      intronic chr11:108082674(-) A-I      intronic chr11:108036589(-) A-I      intronic chr11:108053993(-) A-I      intronic chr11:108054429(-) A-I      intronic chr11:108050836(-) A-I      intronic chr11:108082673(-) A-I      intronic chr11:108076070(-) A-I      intronic chr11:108082057(-) A-I      intronic chr11:108088637(-) A-I      intronic chr11:108036475(-) A-I      intronic chr11:108031507(-) A-I      intronic chr11:108050959(-) A-I      intronic chr11:108084683(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NPAT	chr11:108031446(-) A-I intron -    22327324 chr11:108079083(-) A-I intron -    21960545 chr11:108079265(-) A-I intron -    21960545 chr11:108029109(-) A-T exon 3'UTR    21725310 chr11:108031445(-) A-G intron -    22484847 chr11:108031446(-) A-G intron -    22484847 chr11:108083345(-) C-T intron -    22484847 chr11:108048113(-) A-G intron -    22484847 chr11:108048707(-) A-G intron -    22484847 chr11:108048734(-) A-G intron -    22484847 chr11:108049477(-) A-G intron -    22484847 chr11:108050803(-) A-G intron -    22484847 chr11:108050809(-) A-G intron -    22484847 chr11:108052116(-) A-G intron -    22484847 chr11:108055372(-) A-G intron -    22484847 chr11:108082596(-) A-G intron -    22484847 chr11:108082674(-) A-G intron -    22484847 chr11:108084854(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NPAT	chr11:108029426-108029427(-) m6A 3'UTR//exon       27773535 chr11:108029493-108029494(-) m6A 3'UTR//exon       27773535//22608085 chr11:108029516-108029517(-) m6A 3'UTR//exon       27773535//22608085 chr11:108029551-108029552(-) m6A 3'UTR//exon       24981863//27773535//22608085 chr11:108029617-108029618(-) m6A 3'UTR//exon       24209618//24981863//26404942//27773535//22608085 chr11:108029632-108029633(-) m6A 3'UTR//exon       24209618//24981863//26404942//27773535//22608085 chr11:108029648-108029649(-) m6A 3'UTR//exon       24209618//24981863//26404942//27773535//22608085 chr11:108029658-108029659(-) m6A 3'UTR//exon       24209618//24981863//26404942//27773535//22608085 chr11:108029667-108029668(-) m6A 3'UTR//exon       24209618//24981863//26404942//27773535//22608085 chr11:108029702-108029703(-) m6A CDS//exon       24981863//27773535//22608085 chr11:108031670-108031671(-) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr11:108031776-108031777(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22608085 chr11:108031835-108031836(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22608085 chr11:108031848-108031849(-) m6A CDS//exon//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr11:108031877-108031878(-) m6A CDS//exon//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr11:108031919-108031920(-) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr11:108031966-108031967(-) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr11:108031978-108031979(-) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr11:108032004-108032005(-) m6A CDS//exon//intron       24284625//24981863//26404942//27773535//22608085 chr11:108032113-108032114(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr11:108032119-108032120(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr11:108032165-108032166(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr11:108032182-108032183(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr11:108032257-108032258(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr11:108032281-108032282(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr11:108032382-108032383(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr11:108032488-108032489(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr11:108032552-108032553(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr11:108032573-108032574(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr11:108032641-108032642(-) m6A CDS//exon       22608085 chr11:108042936-108042937(-) m6A CDS//exon       27773535 chr11:108042972-108042973(-) m6A CDS//exon       24284625//27773535//22608085 chr11:108042988-108042989(-) m6A CDS//exon       24284625//27773535//22608085 chr11:108043072-108043073(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085 chr11:108043236-108043237(-) m6A CDS//exon       24284625//22608085 chr11:108043248-108043249(-) m6A CDS//exon       24284625//24981863//26404942//22608085 chr11:108043277-108043278(-) m6A CDS//exon       24284625//24981863//26404942//22608085 chr11:108043327-108043328(-) m6A CDS//exon       24284625//24981863//26404942//22608085 chr11:108043355-108043356(-) m6A CDS//exon       24284625//24981863//26404942//22608085 chr11:108043410-108043411(-) m6A CDS//exon       24284625//24209618//24981863//26404942//22608085 chr11:108043445-108043446(-) m6A CDS//exon       24284625//24981863//26404942//22608085 chr11:108043541-108043542(-) m6A CDS//exon       24284625//24981863//22608085 chr11:108043620-108043621(-) m6A CDS//exon       24284625//22608085 chr11:108044033-108044034(-) m6A CDS//exon       24981863//27773535//22608085 chr11:108044142-108044143(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr11:108044247-108044248(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr11:108044275-108044276(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr11:108044405-108044406(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr11:108044422-108044423(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr11:108044475-108044476(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr11:108044483-108044484(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr11:108046984-108046985(-) m6A CDS//exon       27773535 chr11:108047014-108047015(-) m6A CDS//exon       27773535 chr11:108047095-108047096(-) m6A CDS//exon       27773535 chr11:108047758-108047759(-) m6A CDS//exon       27773535 chr11:108047768-108047769(-) m6A CDS//exon       27773535 chr11:108047772-108047773(-) m6A CDS//exon       27773535 chr11:108047782-108047783(-) m6A CDS//exon       27773535 chr11:108055964-108055965(-) m6A CDS//exon       27773535 chr11:108055987-108055988(-) m6A CDS//exon       27773535 chr11:108093349-108093350(-) m6A 5'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NPAT	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-5p
Interactor2: NPAT

Evidence Support:

Strong-Evidence	RISC-IP
Support Database	ViRBase

References:

PMID	20585629	Target region	5'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HEK293 cells	Interactor2 expression	None
Description	Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.