Basic Information:

  VIRBase ID:  

VHID00412541

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART5-3p:  MIMAT0009205          TRIM59:  NM_173084     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART5-3p	TRIM59
miRBase Accession/Entrez ID	MIMAT0009205	286827
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	IFT80L//MRF1//RNF104//TRIM57//TSBF1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TRIM59	chr3:160161625(-) A-I      intronic chr3:160163877(-) A-I      intronic chr3:160153071(-) A-I      3'UTR chr3:160161618(-) A-I      intronic chr3:160161642(-) A-I      intronic chr3:160161605(-) A-I      intronic chr3:160160758(-) A-I      intronic chr3:160163046(-) A-I      intronic chr3:160154393(-) A-I      3'UTR chr3:160163204(-) A-I      intronic chr3:160163691(-) A-I      intronic chr3:160163318(-) A-I      intronic chr3:160153110(-) A-I      3'UTR chr3:160154419(-) A-I      3'UTR chr3:160154937(-) A-I      3'UTR chr3:160153124(-) A-I      3'UTR chr3:160153026(-) A-I      3'UTR chr3:160153164(-) A-I      3'UTR chr3:160153038(-) A-I      3'UTR chr3:160153138(-) A-I      3'UTR chr3:160153166(-) A-I      3'UTR chr3:160153032(-) A-I      3'UTR chr3:160154314(-) A-I      3'UTR chr3:160155016(-) A-I      3'UTR chr3:160160207(-) A-I      intronic chr3:160163203(-) A-I      intronic chr3:160163871(-) A-I      intronic chr3:160163164(-) A-I      intronic chr3:160163800(-) A-I      intronic chr3:160161525(-) A-I      intronic chr3:160163479(-) A-I      intronic chr3:160163662(-) A-I      intronic chr3:160161623(-) A-I      intronic chr3:160163690(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TRIM59	chr3:160154332(-) T-C exon 3'UTR    22484847 chr3:160154360(-) C-T exon 3'UTR    22484847 chr3:160154937(-) A-G exon 3'UTR    22484847 chr3:160154941(-) T-C exon 3'UTR    22484847 chr3:160154955(-) A-G exon 3'UTR    22484847 chr3:160161592(-) A-G intron -    22484847 chr3:160161623(-) A-G intron -    22484847 chr3:160161635(-) T-C intron -    22484847 chr3:160163121(-) A-G intron -    22484847 chr3:160163204(-) A-G intron -    22484847 chr3:160163479(-) A-G intron -    22484847 chr3:160163540(-) A-C intron -    22484847 chr3:160163870(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TRIM59	chr3:160150879-160150880(-) m6A 3'UTR       27773535 chr3:160150973-160150974(-) m6A 3'UTR       27773535 chr3:160151433-160151434(-) m6A 3'UTR       24981863//27773535//22608085 chr3:160151465-160151466(-) m6A 3'UTR       24981863//27773535//22608085 chr3:160151495-160151496(-) m6A 3'UTR       24981863//27773535//22575960//22608085 chr3:160152260-160152261(-) m6A 3'UTR       27773535 chr3:160152292-160152293(-) m6A 3'UTR       27773535 chr3:160152554-160152555(-) m6A 3'UTR       27773535 chr3:160152615-160152616(-) m6A 3'UTR       27773535 chr3:160152638-160152639(-) m6A 3'UTR       27773535 chr3:160152664-160152665(-) m6A 3'UTR       27773535 chr3:160155979-160155980(-) m6A CDS//intron       25456834//24981863//27773535//22608085 chr3:160156086-160156087(-) m6A CDS       24209618//24981863//28052920//27773535//22608085 chr3:160156097-160156098(-) m6A CDS       24209618//24981863//28052920//27773535//22608085 chr3:160156170-160156171(-) m6A CDS       24209618//24981863//28052920//27773535//22608085 chr3:160156176-160156177(-) m6A CDS       24209618//24981863//28052920//27773535//22608085 chr3:160156380-160156381(-) m6A CDS       24209618//24981863//27773535//22608085 chr3:160156464-160156465(-) m6A CDS       24209618//25456834//24981863//27773535//27371828//22608085 chr3:160156499-160156500(-) m6A CDS       24209618//25456834//24981863//27773535//27371828//22608085 chr3:160156521-160156522(-) m6A CDS       24209618//25456834//24981863//27773535//27371828//22608085 chr3:160156530-160156531(-) m6A CDS       24209618//25456834//24981863//27773535//27371828//22608085 chr3:160156543-160156544(-) m6A CDS       24209618//25456834//24981863//27773535//27371828//22608085 chr3:160156674-160156675(-) m6A CDS       24209618//24981863//27773535//22608085 chr3:160156702-160156703(-) m6A CDS       24209618//24981863//27773535//22608085 chr3:160156827-160156828(-) m6A CDS       24209618//24981863//27773535//22608085 chr3:160156864-160156865(-) m6A CDS       24209618//24981863//27773535//22608085 chr3:160165540-160165541(-) m6A 5'UTR//intron       24981863//22608085 chr3:160166529-160166530(-) m6A 5'UTR//CDS//intron       24209618//24981863//22608085 chr3:160166659-160166660(-) m6A 5'UTR//intron       24981863 chr3:160166693-160166694(-) m6A 5'UTR//intron       24981863 chr3:160167589-160167590(-) m6A 5'UTR//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TRIM59	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HeLa-S3 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART5-3p
Interactor2: TRIM59

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg