Detail Information

Basic Information:


  VIRBase ID:  

HHID00066001

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-186-3p:           ATP5F1B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-186-3p ATP5F1B
miRBase
Accession/Entrez ID		 MIMAT0004612 506
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ATP5B//ATPMB//ATPSB//HEL-S-271

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-186-3p
rs1241044041 chr1:71067653    C/T
rs1318830037 chr1:71067663    C/A
rs1318830037 chr1:71067663    C/T
rs771255877 chr1:71067645    A/C
rs776722712 chr1:71067655    C/T
rs934513177 chr1:71067651    T/C
rs1292420312 chr1:71067659    T/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ATP5F1B
chr12:57036075(-) A-I      intronic
chr12:57034961(-) A-I      intronic
chr12:57035581(-) A-I      intronic
chr12:57034966(-) A-I      intronic
chr12:57035586(-) A-I      intronic
chr12:57035928(-) A-I      intronic
chr12:57034776(-) A-I      intronic
chr12:57036052(-) A-I      intronic
chr12:57036053(-) A-I      intronic
chr12:57035446(-) A-I      intronic
chr12:57034568(-) A-I      intronic
chr12:57034890(-) A-I      intronic
chr12:57034771(-) A-I      intronic
chr12:57034746(-) A-I      intronic
chr12:57035585(-) A-I      intronic
chr12:57035535(-) A-I      intronic
chr12:57033493(-) A-I      intronic
chr12:57038136(-) A-I      intronic
chr12:57035944(-) A-I      intronic
chr12:57035509(-) A-I      intronic
chr12:57034572(-) A-I      intronic
chr12:57034586(-) A-I      intronic
chr12:57034150(-) A-I      intronic
chr12:57038229(-) A-I      intronic
chr12:57034609(-) A-I      intronic
chr12:57034176(-) A-I      intronic
chr12:57034285(-) A-I      intronic
chr12:57035108(-) A-I      intronic
chr12:57035514(-) A-I      intronic
chr12:57035037(-) A-I      intronic
chr12:57036061(-) A-I      intronic
chr12:57035049(-) A-I      intronic
chr12:57034721(-) A-I      intronic
chr12:57035984(-) A-I      intronic
chr12:57035463(-) A-I      intronic
chr12:57034284(-) A-I      intronic
chr12:57034651(-) A-I      intronic
chr12:57035960(-) A-I      intronic
chr12:57034792(-) A-I      intronic
chr12:57034764(-) A-I      intronic
chr12:57034986(-) A-I      intronic
chr12:57035450(-) A-I      intronic
chr12:57035866(-) A-I      intronic
chr12:57035529(-) A-I      intronic
chr12:57034800(-) A-I      intronic
chr12:57034750(-) A-I      intronic
chr12:57034624(-) A-I      intronic
chr12:57035963(-) A-I      intronic
chr12:57035392(-) A-I      intronic
chr12:57035499(-) A-I      intronic
chr12:57035524(-) A-I      intronic
chr12:57034992(-) A-I      intronic
chr12:57034802(-) A-I      intronic
chr12:57034132(-) A-I      intronic
chr12:57035607(-) A-I      intronic
chr12:57034711(-) A-I      intronic
chr12:57034904(-) A-I      intronic
chr12:57034287(-) A-I      intronic
chr12:57034773(-) A-I      intronic
chr12:57034565(-) A-I      intronic

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-186-3p
Exosome Breast milk     22211110
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
ATP5F1B
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)|K562 cells     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-186-3p
Interactor2: ATP5F1B

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...