Detail Information

Basic Information:


  VIRBase ID:  

HHID00065650

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-let-7g-3p:           CHCHD3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-let-7g-3p CHCHD3
miRBase
Accession/Entrez ID		 MIMAT0004584 54927
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - Mic19//MICOS19//MINOS3//PPP1R22

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-let-7g-3p
rs1022640944 chr3:52268290    G/A
rs1166657040 chr3:52268299    A/G
rs1356748432 chr3:52268293    C/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CHCHD3
chr7:132527903(-) A-I      intronic
chr7:132554464(-) A-I      intronic
chr7:132554615(-) A-I      intronic
chr7:132554634(-) A-I      intronic
chr7:132555000(-) A-I      intronic
chr7:132555094(-) A-I      intronic
chr7:132598788(-) A-I      intronic
chr7:132751273(-) A-I      intronic
chr7:132599852(-) A-I      intronic
chr7:132601401(-) A-I      intronic
chr7:132601509(-) A-I      intronic
chr7:132732737(-) A-I      intronic
chr7:132751161(-) A-I      intronic
chr7:132660609(-) A-I      intronic
chr7:132713442(-) A-I      intronic
chr7:132601564(-) A-I      intronic
chr7:132667164(-) A-I      intronic
chr7:132615133(-) A-I      intronic
chr7:132700052(-) A-I      intronic
chr7:132700059(-) A-I      intronic
chr7:132703647(-) A-I      intronic
chr7:132613265(-) A-I      intronic
chr7:132613231(-) A-I      intronic
chr7:132703711(-) A-I      intronic
chr7:132615156(-) A-I      intronic
chr7:132703712(-) A-I      intronic
chr7:132727791(-) A-I      intronic
chr7:132613227(-) A-I      intronic
chr7:132527894(-) A-I      intronic
chr7:132601620(-) A-I      intronic
chr7:132710464(-) A-I      intronic
chr7:132528963(-) A-I      intronic
chr7:132527926(-) A-I      intronic
chr7:132710429(-) A-I      intronic
chr7:132527900(-) A-I      intronic
chr7:132502651(-) A-I      intronic
chr7:132710559(-) A-I      intronic
chr7:132727795(-) A-I      intronic
chr7:132731565(-) A-I      intronic
chr7:132528971(-) A-I      intronic
chr7:132538244(-) A-I      intronic
chr7:132538260(-) A-I      intronic
chr7:132615185(-) A-I      intronic
chr7:132545553(-) A-I      intronic
chr7:132615124(-) A-I      intronic
chr7:132615132(-) A-I      intronic
chr7:132728319(-) A-I      intronic
chr7:132639726(-) A-I      intronic
chr7:132545525(-) A-I      intronic
chr7:132722390(-) A-I      intronic
chr7:132722451(-) A-I      intronic
chr7:132722456(-) A-I      intronic
chr7:132743098(-) A-I      intronic
chr7:132545425(-) A-I      intronic
chr7:132528972(-) A-I      intronic
chr7:132613291(-) A-I      intronic
chr7:132554945(-) A-I      intronic
chr7:132601498(-) A-I      intronic
chr7:132601414(-) A-I      intronic
chr7:132555034(-) A-I      intronic
chr7:132598998(-) A-I      intronic
chr7:132713412(-) A-I      intronic
chr7:132554899(-) A-I      intronic
chr7:132613294(-) A-I      intronic
chr7:132728247(-) A-I      intronic
chr7:132727797(-) A-I      intronic
chr7:132558312(-) A-I      intronic
chr7:132598968(-) A-I      intronic
chr7:132731595(-) A-I      intronic
chr7:132728306(-) A-I      intronic
chr7:132727681(-) A-I      intronic
chr7:132598857(-) A-I      intronic
chr7:132652347(-) A-I      intronic
chr7:132601506(-) A-I      intronic
chr7:132502619(-) A-I      intronic
chr7:132727827(-) A-I      intronic
chr7:132615108(-) A-I      intronic
chr7:132598787(-) A-I      intronic
chr7:132601450(-) A-I      intronic
chr7:132554918(-) A-I      intronic
chr7:132599020(-) A-I      intronic
chr7:132742236(-) A-I      intronic
chr7:132599687(-) A-I      intronic
chr7:132529014(-) A-I      intronic
chr7:132743117(-) A-I      intronic
chr7:132695412(-) A-I      intronic
chr7:132599700(-) A-I      intronic
chr7:132731461(-) A-I      intronic
chr7:132613333(-) A-I      intronic
chr7:132743138(-) A-I      intronic
chr7:132659486(-) A-I      intronic
chr7:132554543(-) A-I      intronic
chr7:132544933(-) A-I      intronic
chr7:132545524(-) A-I      intronic
chr7:132598969(-) A-I      intronic
chr7:132598811(-) A-I      intronic
chr7:132703782(-) A-I      intronic
chr7:132502617(-) A-I      intronic
chr7:132711826(-) A-I      intronic
chr7:132599021(-) A-I      intronic
chr7:132545502(-) A-I      intronic
chr7:132691021(-) A-I      intronic
chr7:132555015(-) A-I      intronic
chr7:132599756(-) A-I      intronic
chr7:132527887(-) A-I      intronic
chr7:132601632(-) A-I      intronic
chr7:132604144(-) A-I      intronic
chr7:132615024(-) A-I      intronic
chr7:132615023(-) A-I      intronic
chr7:132529011(-) A-I      intronic
chr7:132544907(-) A-I      intronic
chr7:132545422(-) A-I      intronic
chr7:132601616(-) A-I      intronic
chr7:132652348(-) A-I      intronic
chr7:132601556(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CHCHD3
chr7:132727681(-) A-I intron -    22327324
chr7:132634975(-) G-A intron -    22484847
chr7:132542871(-) T-C intron -    22484847
chr7:132544839(-) A-G intron -    22484847
chr7:132544843(-) A-G intron -    22484847
chr7:132544907(-) A-G intron -    22484847
chr7:132544933(-) A-G intron -    22484847
chr7:132545005(-) A-G intron -    22484847
chr7:132545422(-) A-G intron -    22484847
chr7:132545425(-) A-G intron -    22484847
chr7:132545502(-) A-G intron -    22484847
chr7:132545524(-) A-G intron -    22484847
chr7:132545548(-) A-G intron -    22484847
chr7:132545665(-) A-G intron -    22484847
chr7:132554618(-) A-G intron -    22484847
chr7:132554918(-) A-G intron -    22484847
chr7:132555015(-) A-G intron -    22484847
chr7:132555024(-) A-G intron -    22484847
chr7:132555047(-) A-G intron -    22484847
chr7:132598968(-) A-G intron -    22484847
chr7:132598969(-) A-G intron -    22484847
chr7:132599687(-) A-G intron -    22484847
chr7:132599700(-) A-G intron -    22484847
chr7:132599705(-) A-G intron -    22484847
chr7:132601414(-) A-G intron -    22484847
chr7:132601608(-) A-G intron -    22484847
chr7:132601616(-) A-G intron -    22484847
chr7:132601632(-) A-G intron -    22484847
chr7:132615108(-) A-G intron -    22484847
chr7:132645566(-) T-C intron -    22484847
chr7:132659549(-) T-C intron -    22484847
chr7:132665981(-) G-A intron -    22484847
chr7:132691060(-) A-G intron -    22484847
chr7:132711826(-) A-G intron -    22484847
chr7:132713412(-) A-G intron -    22484847
chr7:132727681(-) A-G intron -    22484847
chr7:132727796(-) A-G intron -    22484847
chr7:132727797(-) A-G intron -    22484847
chr7:132728247(-) A-G intron -    22484847
chr7:132728253(-) A-G intron -    22484847
chr7:132728306(-) A-G intron -    22484847
chr7:132728323(-) A-G intron -    22484847
chr7:132731461(-) A-G intron -    22484847
chr7:132731595(-) A-G intron -    22484847
chr7:132731596(-) A-G intron -    22484847
chr7:132742221(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CHCHD3
chr7:132469930-132469931(-) m6A 3'UTR//exon       24981863//27773535
chr7:132469974-132469975(-) m6A 3'UTR//exon       24981863//27773535
chr7:132470047-132470048(-) m6A 3'UTR//exon       24981863//27773535
chr7:132470068-132470069(-) m6A 3'UTR//exon       24981863//27773535
chr7:132470163-132470164(-) m6A 3'UTR//exon       24981863//27773535
chr7:132470183-132470184(-) m6A 3'UTR//exon       24981863//27773535
chr7:132470235-132470236(-) m6A 3'UTR//exon       24981863//27773535
chr7:132470275-132470276(-) m6A 3'UTR//exon       24981863//27773535
chr7:132470289-132470290(-) m6A 3'UTR//exon       24981863//27773535
chr7:132470304-132470305(-) m6A 3'UTR//exon       24981863//27773535
chr7:132470324-132470325(-) m6A 3'UTR//exon       24981863//27773535
chr7:132470347-132470348(-) m6A 3'UTR//exon       24981863//27773535
chr7:132470376-132470377(-) m6A 3'UTR//exon       27773535
chr7:132470394-132470395(-) m6A 3'UTR//exon       27773535
chr7:132481205-132481206(-) m6A 3'UTR//CDS//exon       27773535
chr7:132481261-132481262(-) m6A 3'UTR//CDS//exon       27773535
chr7:132481272-132481273(-) m6A 3'UTR//CDS//exon       27773535
chr7:132498207-132498208(-) m6A 3'UTR//intron       27773535
chr7:132498252-132498253(-) m6A 3'UTR//intron       27773535
chr7:132523199-132523200(-) m6A CDS//exon       24981863//27773535//27371828
chr7:132570433-132570434(-) m6A CDS//exon       24981863//28052920//27773535//27371828
chr7:132570445-132570446(-) m6A CDS//exon       24981863//28052920//27773535//27371828
chr7:132570482-132570483(-) m6A CDS//exon       24981863//28052920//27773535//27371828
chr7:132658233-132658234(-) m6A exon//intron       24209618//24981863//28052920//27773535//27371828
chr7:132658301-132658302(-) m6A exon//intron       27773535
chr7:132658322-132658323(-) m6A exon//intron       27773535
chr7:132658345-132658346(-) m6A exon//intron       27773535
chr7:132658367-132658368(-) m6A exon//intron       27773535
chr7:132658467-132658468(-) m6A exon//intron       27773535
chr7:132658474-132658475(-) m6A exon//intron       27773535
chr7:132658496-132658497(-) m6A exon//intron       27773535
chr7:132658561-132658562(-) m6A exon//intron       27773535
chr7:132658569-132658570(-) m6A exon//intron       25456834//24981863//27773535//27371828
chr7:132658615-132658616(-) m6A exon//intron       25456834//24981863//27371828
chr7:132658622-132658623(-) m6A exon//intron       25456834//24981863//27371828
chr7:132658637-132658638(-) m6A exon//intron       25456834//24981863//27371828
chr7:132658651-132658652(-) m6A exon//intron       25456834//24981863//27371828
chr7:132658660-132658661(-) m6A exon//intron       25456834//24981863//27371828
chr7:132658691-132658692(-) m6A exon//intron       25456834//24981863
chr7:132658712-132658713(-) m6A exon//intron       24981863
chr7:132658757-132658758(-) m6A exon//intron       24981863
chr7:132660022-132660023(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828
chr7:132707180-132707181(-) m6A CDS//intron       24284625//24981863//28052920//27773535//27371828
chr7:132707238-132707239(-) m6A CDS//intron       24981863//27773535//27371828
chr7:132707247-132707248(-) m6A CDS//intron       24981863//27773535//27371828
chr7:132720553-132720554(-) m6A 3'UTR//intron       27773535
chr7:132766641-132766642(-) m6A CDS//exon       27371828//27773536
chr7:132766687-132766688(-) m6A CDS//exon       27371828//27773536
chr7:132766705-132766706(-) m6A 5'UTR//exon       27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-let-7g-3p
Exosome Breast milk     22211110
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Serum     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cerebrospinal fluid     24797360
Microvesicle Colon cancer cell line (LIM1863)|Mesenchymal stem cells     -
CHCHD3
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-let-7g-3p
Interactor2: CHCHD3

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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