Detail Information

Basic Information:


  VIRBase ID:  

HHID00065644

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-let-7g-3p:           RNF19A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-let-7g-3p RNF19A
miRBase
Accession/Entrez ID		 MIMAT0004584 25897
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - RNF19

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-let-7g-3p
rs1022640944 chr3:52268290    G/A
rs1166657040 chr3:52268299    A/G
rs1356748432 chr3:52268293    C/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RNF19A
chr8:101289691(-) A-I      intronic
chr8:101289708(-) A-I      intronic
chr8:101302581(-) A-I      intronic
chr8:101302537(-) A-I      intronic
chr8:101302509(-) A-I      intronic
chr8:101298024(-) A-I      intronic
chr8:101292160(-) A-I      intronic
chr8:101292139(-) A-I      intronic
chr8:101289775(-) A-I      intronic
chr8:101289745(-) A-I      intronic
chr8:101289743(-) A-I      intronic
chr8:101289724(-) A-I      intronic
chr8:101316454(-) A-I      intronic
chr8:101316427(-) A-I      intronic
chr8:101316403(-) A-I      intronic
chr8:101289637(-) A-I      intronic
chr8:101289710(-) A-I      intronic
chr8:101316383(-) A-I      intronic
chr8:101316261(-) A-I      intronic
chr8:101316250(-) A-I      intronic
chr8:101316127(-) A-I      intronic
chr8:101316089(-) A-I      intronic
chr8:101315948(-) A-I      intronic
chr8:101318157(-) A-I      intronic
chr8:101284945(-) A-I      intronic
chr8:101288946(-) A-I      intronic
chr8:101289632(-) A-I      intronic
chr8:101289709(-) A-I      intronic
chr8:101289636(-) A-I      intronic
chr8:101312799(-) A-I      5'UTR
chr8:101312875(-) A-I      5'UTR
chr8:101312759(-) A-I      5'UTR
chr8:101312671(-) A-I      intronic
chr8:101316481(-) A-I      intronic
chr8:101316313(-) A-I      intronic
chr8:101302523(-) A-I      intronic
chr8:101316290(-) A-I      intronic
chr8:101316123(-) A-I      intronic
chr8:101317289(-) A-I      intronic
chr8:101288948(-) A-I      intronic
chr8:101284807(-) A-I      intronic
chr8:101288797(-) A-I      intronic
chr8:101316471(-) A-I      intronic
chr8:101316329(-) A-I      intronic
chr8:101316408(-) A-I      intronic
chr8:101315908(-) A-I      intronic
chr8:101316083(-) A-I      intronic
chr8:101302562(-) A-I      intronic
chr8:101315934(-) A-I      intronic
chr8:101316432(-) A-I      intronic
chr8:101312798(-) A-I      5'UTR
chr8:101312845(-) A-I      5'UTR
chr8:101312765(-) A-I      5'UTR
chr8:101312847(-) A-I      5'UTR
chr8:101316485(-) A-I      intronic
chr8:101308570(-) A-I      intronic
chr8:101316323(-) A-I      intronic
chr8:101302494(-) A-I      intronic
chr8:101316042(-) A-I      intronic
chr8:101316038(-) A-I      intronic
chr8:101316065(-) A-I      intronic
chr8:101316341(-) A-I      intronic
chr8:101316475(-) A-I      intronic
chr8:101289678(-) A-I      intronic
chr8:101308448(-) A-I      intronic
chr8:101316072(-) A-I      intronic
chr8:101317296(-) A-I      intronic
chr8:101288871(-) A-I      intronic
chr8:101316463(-) A-I      intronic
chr8:101316276(-) A-I      intronic
chr8:101315907(-) A-I      intronic
chr8:101316263(-) A-I      intronic
chr8:101316345(-) A-I      intronic
chr8:101315969(-) A-I      intronic
chr8:101315895(-) A-I      intronic
chr8:101316078(-) A-I      intronic
chr8:101316296(-) A-I      intronic
chr8:101286240(-) A-I      intronic
chr8:101315947(-) A-I      intronic
chr8:101312702(-) A-I      intronic
chr8:101302468(-) A-I      intronic
chr8:101316300(-) A-I      intronic
chr8:101315954(-) A-I      intronic
chr8:101286816(-) A-I      intronic
chr8:101288859(-) A-I      intronic
chr8:101315960(-) A-I      intronic
chr8:101301115(-) A-I      intronic
chr8:101316431(-) A-I      intronic
chr8:101288927(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RNF19A
chr8:101271291(-) A-I exon CDS    22327324
chr8:101315917(-) A-I intron -    22327324
chr8:101315934(-) A-I intron -    22327324
chr8:101315947(-) A-I intron -    22327324
chr8:101315954(-) A-I intron -    22327324
chr8:101316281(-) A-I intron -    22327324
chr8:101316300(-) A-I intron -    22327324
chr8:101316323(-) A-I intron -    22327324
chr8:101316341(-) A-I intron -    22327324
chr8:101316475(-) A-I intron -    22327324
chr8:101280019(-) A-G intron -    22484847
chr8:101284807(-) A-G intron -    22484847
chr8:101286172(-) T-C intron -    22484847
chr8:101288797(-) A-G intron -    22484847
chr8:101288861(-) A-G intron -    22484847
chr8:101288903(-) A-G intron -    22484847
chr8:101288927(-) A-G intron -    22484847
chr8:101288948(-) A-G intron -    22484847
chr8:101289678(-) A-G intron -    22484847
chr8:101289792(-) T-C intron -    22484847
chr8:101301115(-) A-G intron -    22484847
chr8:101308585(-) A-T intron -    22484847
chr8:101308593(-) G-T intron -    22484847
chr8:101312765(-) A-G exon 5'UTR    22484847
chr8:101312845(-) A-G exon 5'UTR    22484847
chr8:101312847(-) A-G exon 5'UTR    22484847
chr8:101315907(-) A-G intron -    22484847
chr8:101315908(-) A-G intron -    22484847
chr8:101315917(-) A-G intron -    22484847
chr8:101315934(-) A-G intron -    22484847
chr8:101315947(-) A-G intron -    22484847
chr8:101315954(-) A-G intron -    22484847
chr8:101316042(-) A-G intron -    22484847
chr8:101316044(-) A-G intron -    22484847
chr8:101316081(-) A-G intron -    22484847
chr8:101316118(-) A-G intron -    22484847
chr8:101316281(-) A-G intron -    22484847
chr8:101316290(-) A-G intron -    22484847
chr8:101316293(-) A-G intron -    22484847
chr8:101316296(-) A-G intron -    22484847
chr8:101316300(-) A-G intron -    22484847
chr8:101316306(-) A-G intron -    22484847
chr8:101316323(-) A-G intron -    22484847
chr8:101316329(-) A-G intron -    22484847
chr8:101316341(-) A-G intron -    22484847
chr8:101316345(-) A-G intron -    22484847
chr8:101316431(-) A-G intron -    22484847
chr8:101316432(-) A-G intron -    22484847
chr8:101316441(-) A-G intron -    22484847
chr8:101316457(-) A-G intron -    22484847
chr8:101316463(-) A-G intron -    22484847
chr8:101316475(-) A-G intron -    22484847
chr8:101316481(-) A-G intron -    22484847
chr8:101317233(-) T-C intron -    22484847
chr8:101317296(-) A-G intron -    22484847
chr8:101317358(-) A-C intron -    22484847
chr8:101311310(-) A-G intron -    22484847
chr8:101312372(-) A-G intron -    22484847
chr8:101312382(-) A-G intron -    22484847
chr8:101312385(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RNF19A
chr8:101269665-101269666(-) m6A 3'UTR       26404942
chr8:101269729-101269730(-) m6A 3'UTR       26404942
chr8:101269821-101269822(-) m6A 3'UTR       26404942
chr8:101269867-101269868(-) m6A 3'UTR       26404942
chr8:101270070-101270071(-) m6A 3'UTR       26404942
chr8:101270219-101270220(-) m6A 3'UTR       26404942
chr8:101270357-101270358(-) m6A 3'UTR       26404942
chr8:101270383-101270384(-) m6A 3'UTR       26404942
chr8:101270426-101270427(-) m6A 3'UTR       26404942
chr8:101270522-101270523(-) m6A 3'UTR       26404942
chr8:101270607-101270608(-) m6A 3'UTR       24284625//26404942//27773535//22608085
chr8:101270726-101270727(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:101270794-101270795(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:101270821-101270822(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:101270845-101270846(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:101270885-101270886(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:101270906-101270907(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:101270953-101270954(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:101271079-101271080(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:101271189-101271190(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:101271203-101271204(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:101271225-101271226(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:101271269-101271270(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:101272084-101272085(-) m6A CDS//exon       24209618//26404942//27773535
chr8:101272151-101272152(-) m6A CDS//exon       27773535//22575960
chr8:101273781-101273782(-) m6A CDS//exon//intron       26404942
chr8:101273862-101273863(-) m6A CDS//exon//intron       26404942//27773535
chr8:101273957-101273958(-) m6A CDS//exon//intron       26404942//27773535
chr8:101276276-101276277(-) m6A CDS//exon//intron       26404942
chr8:101287228-101287229(-) m6A CDS//exon       26404942
chr8:101287276-101287277(-) m6A CDS       26404942
chr8:101287298-101287299(-) m6A CDS       24209618//26404942//27773535
chr8:101287321-101287322(-) m6A CDS       24209618//26404942//27773535
chr8:101299734-101299735(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22608085
chr8:101299977-101299978(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:101300019-101300020(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:101300030-101300031(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:101300085-101300086(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr8:101300310-101300311(-) m6A 5'UTR//CDS       24284625//24981863//26404942//27773535//22608085
chr8:101300346-101300347(-) m6A CDS//intron       24284625//24981863//26404942//27773535//22608085
chr8:101300393-101300394(-) m6A CDS//intron       24981863//26404942//27773535//22608085
chr8:101300438-101300439(-) m6A 5'UTR       24981863//26404942//27773535//22608085
chr8:101300462-101300463(-) m6A 5'UTR       24981863//26404942//27773535//22608085
chr8:101312761-101312762(-) m6A 5'UTR//intron       24981863//26404942//27773535//22608085
chr8:101315389-101315390(-) m6A 5'UTR//exon//intron       26404942
chr8:101315405-101315406(-) m6A 5'UTR//exon//intron       26404942
chr8:101315456-101315457(-) m6A 5'UTR//exon//intron       26404942
chr8:101322190-101322191(-) m6A 5'UTR//exon//intron       24981863//27371828//27773536
chr8:101322247-101322248(-) m6A 5'UTR//exon//intron       25456834//24981863//27371828//27773536
chr8:101322374-101322375(-) m1A 5'UTR//exon//intron       26863196
chr8:101322479-101322480(-) m6A 5'UTR//intron       -
chr8:101324577-101324578(-) m6A 5'UTR//intron       27371828
chr8:101324618-101324619(-) m6A 5'UTR//intron       -
chr8:101348379-101348380(-) m6A 5'UTR//exon//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-let-7g-3p
Exosome Breast milk     22211110
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Serum     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cerebrospinal fluid     24797360
Microvesicle Colon cancer cell line (LIM1863)|Mesenchymal stem cells     -
RNF19A
Chromatin K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-let-7g-3p
Interactor2: RNF19A

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...