Detail Information

Basic Information:


  VIRBase ID:  

HHID00065632

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-let-7g-3p:           CEP350:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-let-7g-3p CEP350
miRBase
Accession/Entrez ID
MIMAT0004584 9857
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CAP350//GM133

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-let-7g-3p
rs1022640944 chr3:52268290    G/A
rs1166657040 chr3:52268299    A/G
rs1356748432 chr3:52268293    C/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CEP350
chr1:179971530(+) A-I      intronic
chr1:179971458(+) A-I      intronic
chr1:179930422(+) A-I      intronic
chr1:179930485(+) A-I      intronic
chr1:179964579(+) A-I      intronic
chr1:179964584(+) A-I      intronic
chr1:179971408(+) A-I      intronic
chr1:179971410(+) A-I      intronic
chr1:179971413(+) A-I      intronic
chr1:179971423(+) A-I      intronic
chr1:179971529(+) A-I      intronic
chr1:179971505(+) A-I      intronic
chr1:179971534(+) A-I      intronic
chr1:179966599(+) A-I      intronic
chr1:179971519(+) A-I      intronic
chr1:179971520(+) A-I      intronic
chr1:180076633(+) A-I      intronic
chr1:179964604(+) A-I      intronic
chr1:179971422(+) A-I      intronic
chr1:179971449(+) A-I      intronic
chr1:179971399(+) A-I      intronic
chr1:179971445(+) A-I      intronic
chr1:179971457(+) A-I      intronic
chr1:179964597(+) A-I      intronic
chr1:179964620(+) A-I      intronic
chr1:179964619(+) A-I      intronic
chr1:179971456(+) A-I      intronic
chr1:179971521(+) A-I      intronic
chr1:179995285(+) A-I      intronic
chr1:180036735(+) A-I      intronic
chr1:179995263(+) A-I      intronic
chr1:179995245(+) A-I      intronic
chr1:179928460(+) A-I      intronic
chr1:179942254(+) A-I      intronic
chr1:179970400(+) A-I      intronic
chr1:180036739(+) A-I      intronic
chr1:179930395(+) A-I      intronic
chr1:179995209(+) A-I      intronic
chr1:180019596(+) A-I      intronic
chr1:180051579(+) A-I      intronic
chr1:179970614(+) A-I      intronic
chr1:180076554(+) A-I      intronic
chr1:179937232(+) A-I      intronic
chr1:180076594(+) A-I      intronic
chr1:179971376(+) A-I      intronic
chr1:180076608(+) A-I      intronic
chr1:179930403(+) A-I      intronic
chr1:179936686(+) A-I      intronic
chr1:180076620(+) A-I      intronic
chr1:180019551(+) A-I      intronic
chr1:179930323(+) A-I      intronic
chr1:179959823(+) A-I      intronic
chr1:179937316(+) A-I      intronic
chr1:179970615(+) A-I      intronic
chr1:180076723(+) A-I      intronic
chr1:180076724(+) A-I      intronic
chr1:179934995(+) A-I      intronic
chr1:179934970(+) A-I      intronic
chr1:179930430(+) A-I      intronic
chr1:179942129(+) A-I      intronic
chr1:179971414(+) A-I      intronic
chr1:179943344(+) A-I      intronic
chr1:179934855(+) A-I      intronic
chr1:179930462(+) A-I      intronic
chr1:179931081(+) A-I      intronic
chr1:179937346(+) A-I      intronic
chr1:179931243(+) A-I      intronic
chr1:179943987(+) A-I      intronic
chr1:179931216(+) A-I      intronic
chr1:180018901(+) A-I      intronic
chr1:180032676(+) A-I      intronic
chr1:179937358(+) A-I      intronic
chr1:179963689(+) A-I      intronic
chr1:179970628(+) A-I      intronic
chr1:179931049(+) A-I      intronic
chr1:180032685(+) A-I      intronic
chr1:179964589(+) A-I      intronic
chr1:180032837(+) A-I      intronic
chr1:180032931(+) A-I      intronic
chr1:179959831(+) A-I      intronic
chr1:179936712(+) A-I      intronic
chr1:179937373(+) A-I      intronic
chr1:179966564(+) A-I      intronic
chr1:179941769(+) A-I      intronic
chr1:179967580(+) A-I      intronic
chr1:179967524(+) A-I      intronic
chr1:179943370(+) A-I      intronic
chr1:179963706(+) A-I      intronic
chr1:179970629(+) A-I      intronic
chr1:179942120(+) A-I      intronic
chr1:180018859(+) A-I      intronic
chr1:179995514(+) A-I      intronic
chr1:179931074(+) A-I      intronic
chr1:180018796(+) A-I      intronic
chr1:179966584(+) A-I      intronic
chr1:180018748(+) A-I      intronic
chr1:179936793(+) A-I      intronic
chr1:179995286(+) A-I      intronic
chr1:180018743(+) A-I      intronic
chr1:179997678(+) A-I      intronic
chr1:180019667(+) A-I      intronic
chr1:179967499(+) A-I      intronic
chr1:179936728(+) A-I      intronic
chr1:179943491(+) A-I      intronic
chr1:179931146(+) A-I      intronic
chr1:179943406(+) A-I      intronic
chr1:179996759(+) A-I      intronic
chr1:180025708(+) A-I      intronic
chr1:179930334(+) A-I      intronic
chr1:179996740(+) A-I      intronic
chr1:179996677(+) A-I      intronic
chr1:179996646(+) A-I      intronic
chr1:179996553(+) A-I      intronic
chr1:179964593(+) A-I      intronic
chr1:179930371(+) A-I      intronic
chr1:180029602(+) A-I      intronic
chr1:179936713(+) A-I      intronic
chr1:180030354(+) A-I      intronic
chr1:180030468(+) A-I      intronic
chr1:180053881(+) A-I      intronic
chr1:179966617(+) A-I      intronic
chr1:179937345(+) A-I      intronic
chr1:180032419(+) A-I      intronic
chr1:179936650(+) A-I      intronic
chr1:179966623(+) A-I      intronic
chr1:180032345(+) A-I      intronic
chr1:180018862(+) A-I      intronic
chr1:179944071(+) A-I      intronic
chr1:179971604(+) A-I      intronic
chr1:179936676(+) A-I      intronic
chr1:179928409(+) A-I      intronic
chr1:179928469(+) A-I      intronic
chr1:180018104(+) A-I      intronic
chr1:179931126(+) A-I      intronic
chr1:180060737(+) A-I      intronic
chr1:179971470(+) A-I      intronic
chr1:179943893(+) A-I      intronic
chr1:179930379(+) A-I      intronic
chr1:180032883(+) A-I      intronic
chr1:180032402(+) A-I      intronic
chr1:179937208(+) A-I      intronic
chr1:179928408(+) A-I      intronic
chr1:179936605(+) A-I      intronic
chr1:179928731(+) A-I      intronic
chr1:180030546(+) A-I      intronic
chr1:180078441(+) A-I      intronic
chr1:180029705(+) A-I      intronic
chr1:180030515(+) A-I      intronic
chr1:179997774(+) A-I      intronic
chr1:179931217(+) A-I      intronic
chr1:179958459(+) A-I      intronic
chr1:180051670(+) A-I      intronic
chr1:179931247(+) A-I      intronic
chr1:180013285(+) A-I      Syn:Ser->Ser
chr1:179943970(+) A-I      intronic
chr1:180061064(+) A-I      intronic
chr1:179971462(+) A-I      intronic
chr1:180019748(+) A-I      intronic
chr1:180032509(+) A-I      intronic
chr1:179959847(+) A-I      intronic
chr1:179943871(+) A-I      intronic
chr1:179931098(+) A-I      intronic
chr1:180060875(+) A-I      intronic
chr1:180050183(+) A-I      intronic
chr1:179970616(+) A-I      intronic
chr1:179995283(+) A-I      intronic
chr1:180032566(+) A-I      intronic
chr1:179966535(+) A-I      intronic
chr1:180053911(+) A-I      intronic
chr1:180018868(+) A-I      intronic
chr1:179931165(+) A-I      intronic
chr1:179950951(+) A-I      intronic
chr1:180019622(+) A-I      intronic
chr1:179963772(+) A-I      intronic
chr1:179931061(+) A-I      intronic
chr1:180061080(+) A-I      intronic
chr1:179931129(+) A-I      intronic
chr1:179963763(+) A-I      intronic
chr1:180029590(+) A-I      intronic
chr1:179944005(+) A-I      intronic
chr1:179943969(+) A-I      intronic
chr1:179943626(+) A-I      intronic
chr1:179963851(+) A-I      intronic
chr1:180076549(+) A-I      intronic
chr1:179996722(+) A-I      intronic
chr1:179970493(+) A-I      intronic
chr1:180061154(+) A-I      intronic
chr1:180029599(+) A-I      intronic
chr1:180008199(+) A-I      intronic
chr1:179970581(+) A-I      intronic
chr1:179970494(+) A-I      intronic
chr1:179971453(+) A-I      intronic
chr1:179930463(+) A-I      intronic
chr1:179928730(+) A-I      intronic
chr1:179931004(+) A-I      intronic
chr1:179997656(+) A-I      intronic
chr1:179931202(+) A-I      intronic
chr1:179944110(+) A-I      intronic
chr1:179936672(+) A-I      intronic
chr1:179941651(+) A-I      intronic
chr1:179959829(+) A-I      intronic
chr1:179963755(+) A-I      intronic
chr1:179936600(+) A-I      intronic
chr1:179930484(+) A-I      intronic
chr1:180018092(+) A-I      intronic
chr1:180053898(+) A-I      intronic
chr1:180009638(+) A-I      intronic
chr1:179937355(+) A-I      intronic
chr1:179996780(+) A-I      intronic
chr1:180032389(+) A-I      intronic
chr1:179944113(+) A-I      intronic
chr1:179959164(+) A-I      intronic
chr1:179996533(+) A-I      intronic
chr1:179966557(+) A-I      intronic
chr1:179963701(+) A-I      intronic
chr1:179963666(+) A-I      intronic
chr1:180059691(+) A-I      intronic
chr1:179964578(+) A-I      intronic
chr1:179928876(+) A-I      intronic
chr1:180058598(+) A-I      intronic
chr1:179966563(+) A-I      intronic
chr1:179971375(+) A-I      intronic
chr1:179964465(+) A-I      intronic
chr1:180038131(+) A-I      intronic
chr1:179928349(+) A-I      intronic
chr1:179931120(+) A-I      intronic
chr1:179997670(+) A-I      intronic
chr1:179964721(+) A-I      intronic
chr1:179931110(+) A-I      intronic
chr1:180038158(+) A-I      intronic
chr1:180029526(+) A-I      intronic
chr1:180009685(+) A-I      intronic
chr1:179964661(+) A-I      intronic
chr1:179943925(+) A-I      intronic
chr1:179966531(+) A-I      intronic
chr1:180032537(+) A-I      intronic
chr1:179995233(+) A-I      intronic
chr1:179956908(+) A-I      intronic
chr1:180053880(+) A-I      intronic
chr1:179928377(+) A-I      intronic
chr1:180032390(+) A-I      intronic
chr1:179943858(+) A-I      intronic
chr1:179997818(+) A-I      intronic
chr1:180019743(+) A-I      intronic
chr1:180019813(+) A-I      intronic
chr1:179930472(+) A-I      intronic
chr1:179944019(+) A-I      intronic
chr1:179966555(+) A-I      intronic
chr1:179943877(+) A-I      intronic
chr1:180019627(+) A-I      intronic
chr1:179963754(+) A-I      intronic
chr1:180032400(+) A-I      intronic
chr1:179945644(+) A-I      intronic
chr1:179997779(+) A-I      intronic
chr1:180032873(+) A-I      intronic
chr1:180032903(+) A-I      intronic
chr1:180018805(+) A-I      intronic
chr1:179930498(+) A-I      intronic
chr1:179930352(+) A-I      intronic
chr1:179970646(+) A-I      intronic
chr1:180076534(+) A-I      intronic
chr1:179936664(+) A-I      intronic
chr1:179997780(+) A-I      intronic
chr1:179936647(+) A-I      intronic
chr1:179995515(+) A-I      intronic
chr1:180025721(+) A-I      intronic
chr1:179930303(+) A-I      intronic
chr1:179970458(+) A-I      intronic
chr1:180053920(+) A-I      intronic
chr1:179966489(+) A-I      intronic
chr1:179964660(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CEP350
chr1:179936600(+) A-I intron -    15545495
chr1:179936605(+) A-I intron -    15545495
chr1:179936650(+) A-I intron -    15545495
chr1:179936664(+) A-I intron -    15545495
chr1:179936672(+) A-I intron -    15545495
chr1:179936676(+) A-I intron -    15545495
chr1:180013285(+) A-I exon CDS    22327324
chr1:179996646(+) A-I intron -    21960545
chr1:180038158(+) A-I intron -    21960545
chr1:179928349(+) A-G intron -    22484847
chr1:179928408(+) A-G intron -    22484847
chr1:179928409(+) A-G intron -    22484847
chr1:179928452(+) G-A intron -    22484847
chr1:179928469(+) A-G intron -    22484847
chr1:179930303(+) A-G intron -    22484847
chr1:179930352(+) A-G intron -    22484847
chr1:179930379(+) A-G intron -    22484847
chr1:179930463(+) A-G intron -    22484847
chr1:179930472(+) A-G intron -    22484847
chr1:179930484(+) A-G intron -    22484847
chr1:179930498(+) A-G intron -    22484847
chr1:179931098(+) A-G intron -    22484847
chr1:179931110(+) A-G intron -    22484847
chr1:179931120(+) A-G intron -    22484847
chr1:179931165(+) A-G intron -    22484847
chr1:179931202(+) A-G intron -    22484847
chr1:179931217(+) A-G intron -    22484847
chr1:179931247(+) A-G intron -    22484847
chr1:179936600(+) A-G intron -    22484847
chr1:179936647(+) A-G intron -    22484847
chr1:179936650(+) A-G intron -    22484847
chr1:179936664(+) A-G intron -    22484847
chr1:179937208(+) A-G intron -    22484847
chr1:179944005(+) A-G intron -    22484847
chr1:179960560(+) T-C intron -    22484847
chr1:179960607(+) A-T intron -    22484847
chr1:179963666(+) A-G intron -    22484847
chr1:179963701(+) A-G intron -    22484847
chr1:179966489(+) A-G intron -    22484847
chr1:179966531(+) A-G intron -    22484847
chr1:179966535(+) A-G intron -    22484847
chr1:179966555(+) A-G intron -    22484847
chr1:179966557(+) A-G intron -    22484847
chr1:179966563(+) A-G intron -    22484847
chr1:179970458(+) A-G intron -    22484847
chr1:179970494(+) A-G intron -    22484847
chr1:179970646(+) A-G intron -    22484847
chr1:179971375(+) A-G intron -    22484847
chr1:179995283(+) A-G intron -    22484847
chr1:179995515(+) A-G intron -    22484847
chr1:179996533(+) A-G intron -    22484847
chr1:179996722(+) A-G intron -    22484847
chr1:179997656(+) A-G intron -    22484847
chr1:179997774(+) A-G intron -    22484847
chr1:179997780(+) A-G intron -    22484847
chr1:179997800(+) G-A intron -    22484847
chr1:180008191(+) T-A intron -    22484847
chr1:180008192(+) G-A intron -    22484847
chr1:180018805(+) A-G intron -    22484847
chr1:180018862(+) A-G intron -    22484847
chr1:180018868(+) A-G intron -    22484847
chr1:180019622(+) A-G intron -    22484847
chr1:180019627(+) A-G intron -    22484847
chr1:180019748(+) A-G intron -    22484847
chr1:180026234(+) C-T intron -    22484847
chr1:180026516(+) G-A intron -    22484847
chr1:180029599(+) A-G intron -    22484847
chr1:180032389(+) A-G intron -    22484847
chr1:180032390(+) A-G intron -    22484847
chr1:180032419(+) A-G intron -    22484847
chr1:180032873(+) A-G intron -    22484847
chr1:180032883(+) A-G intron -    22484847
chr1:180032903(+) A-G intron -    22484847
chr1:180050036(+) T-C intron -    22484847
chr1:180060737(+) A-G intron -    22484847
chr1:180060875(+) A-G intron -    22484847
chr1:180078516(+) G-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CEP350
chr1:179924014-179924015(+) m6A 5'UTR       24981863//22608085
chr1:179924030-179924031(+) m6A 5'UTR       24981863//22608085
chr1:179924112-179924113(+) m6A 5'UTR       22608085
chr1:179938099-179938100(+) m6A intron       22608085
chr1:179938169-179938170(+) m6A intron       22608085
chr1:179938239-179938240(+) m6A intron       22608085
chr1:179938342-179938343(+) m6A intron       22608085
chr1:179938394-179938395(+) m6A intron       22608085
chr1:179938460-179938461(+) m6A intron       22608085
chr1:179938506-179938507(+) m6A intron       22608085
chr1:179938563-179938564(+) m6A intron       22608085
chr1:179938580-179938581(+) m6A intron       22608085
chr1:179961338-179961339(+) m6A CDS       24284625
chr1:179965772-179965773(+) m6A CDS       24284625//24209618//24981863//22608085
chr1:179965952-179965953(+) m6A CDS       24284625//24981863//22575960//22608085
chr1:179965976-179965977(+) m6A CDS       24284625//24981863//22575960//22608085
chr1:179966134-179966135(+) m6A CDS       24284625//24981863//22575960//22608085
chr1:179966143-179966144(+) m6A CDS       24284625//24981863//22575960//22608085
chr1:179966164-179966165(+) m6A CDS       24284625//24981863//22575960//22608085
chr1:179966173-179966174(+) m6A CDS       24284625//24981863//22575960//22608085
chr1:179966186-179966187(+) m6A CDS       24284625//24981863//22575960//22608085
chr1:179972377-179972378(+) m6A CDS       24981863
chr1:179972390-179972391(+) m6A CDS       24981863
chr1:179975610-179975611(+) m6A CDS       24981863
chr1:179975698-179975699(+) m6A CDS       24981863//22608085
chr1:179981103-179981104(+) m6A CDS       24981863//22608085
chr1:179981130-179981131(+) m6A CDS       24981863//22608085
chr1:179981164-179981165(+) m6A CDS       24981863//22608085
chr1:179981197-179981198(+) m6A CDS       24284625//24981863//22608085
chr1:179983033-179983034(+) m6A CDS       24284625//24981863//27773535//22608085
chr1:179983047-179983048(+) m6A CDS       24284625//24981863//27773535//22608085
chr1:179983096-179983097(+) m6A CDS       24284625//24981863//26404942//22608085
chr1:179983152-179983153(+) m6A CDS       24284625//24981863//26404942//22575960//22608085
chr1:179983245-179983246(+) m6A CDS       24284625//24981863//27773535//22608085
chr1:179983303-179983304(+) m6A CDS       24284625//24981863//27773535//22608085
chr1:179983456-179983457(+) m6A CDS       24284625//24981863//27773535//22608085
chr1:179983464-179983465(+) m6A CDS       24284625//24981863//27773535//22608085
chr1:179983565-179983566(+) m6A CDS       24284625//24981863//22608085
chr1:179983592-179983593(+) m6A CDS       24981863//22608085
chr1:179983634-179983635(+) m6A CDS       24981863
chr1:179984988-179984989(+) m6A CDS       24981863
chr1:179985026-179985027(+) m6A CDS       24981863
chr1:179989168-179989169(+) m6A CDS       24284625
chr1:179989344-179989345(+) m6A CDS       24284625//24981863//26404942//22608085
chr1:179989371-179989372(+) m6A CDS       24284625//24981863//26404942//22608085
chr1:179989481-179989482(+) m6A CDS       24284625//24981863//26404942//22608085
chr1:179989521-179989522(+) m6A CDS       24284625//24981863//22608085
chr1:179989528-179989529(+) m6A CDS       24284625//24981863//22608085
chr1:179989689-179989690(+) m6A CDS       24284625//24981863//22608085
chr1:179989737-179989738(+) m6A CDS       24284625//24981863//22608085
chr1:179989774-179989775(+) m6A CDS       24284625//24981863//22608085
chr1:179989814-179989815(+) m6A CDS       24284625//24981863//22608085
chr1:179989904-179989905(+) m6A CDS       24284625//24981863//22575960//22608085
chr1:179989914-179989915(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr1:179989986-179989987(+) m6A CDS       24284625//24209618//24981863//22608085
chr1:179990064-179990065(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr1:179991841-179991842(+) m6A CDS       24284625//24981863//22575960//22608085
chr1:179991850-179991851(+) m6A CDS       24284625//24981863//22575960//22608085
chr1:179991858-179991859(+) m6A CDS       24284625//24981863//22575960//22608085
chr1:179991942-179991943(+) m6A CDS       24981863//22608085
chr1:179991948-179991949(+) m6A CDS       24981863//22608085
chr1:179991977-179991978(+) m6A CDS       24981863
chr1:179993576-179993577(+) m6A CDS       24981863
chr1:180010313-180010314(+) m6A CDS       24981863
chr1:180010325-180010326(+) m6A CDS       24981863
chr1:180010349-180010350(+) m6A CDS       24981863
chr1:180010362-180010363(+) m6A CDS       24981863
chr1:180010369-180010370(+) m6A CDS       24981863
chr1:180012320-180012321(+) Cm CDS//intron       -
chr1:180023600-180023601(+) m6A CDS       24981863
chr1:180031404-180031405(+) m6A CDS       24981863
chr1:180031419-180031420(+) m6A CDS       24981863
chr1:180031450-180031451(+) m6A CDS       24981863
chr1:180031461-180031462(+) m6A CDS       24981863
chr1:180034315-180034316(+) m6A CDS       24981863
chr1:180044270-180044271(+) m6A CDS       24981863//22608085
chr1:180044290-180044291(+) m6A CDS       24981863//22608085
chr1:180044306-180044307(+) m6A CDS       24981863//22608085
chr1:180044313-180044314(+) m6A CDS       24981863//22608085
chr1:180044327-180044328(+) m6A CDS       24981863//22608085
chr1:180044335-180044336(+) m6A CDS       24981863//22608085
chr1:180044343-180044344(+) m6A CDS       24981863//22608085
chr1:180044348-180044349(+) m6A CDS       24981863//22608085
chr1:180053233-180053234(+) m6A CDS       24981863
chr1:180053249-180053250(+) m6A CDS       24981863
chr1:180053273-180053274(+) m6A CDS       24981863
chr1:180053318-180053319(+) m6A CDS//intron       24981863
chr1:180056736-180056737(+) m6A CDS//exon       24981863
chr1:180056766-180056767(+) m6A CDS//exon       24981863
chr1:180056819-180056820(+) m6A CDS//exon       24981863
chr1:180056831-180056832(+) m6A CDS//exon       24981863
chr1:180062109-180062110(+) m6A CDS//exon       22608085
chr1:180062177-180062178(+) m6A CDS//exon       24981863//27773535//22608085
chr1:180062235-180062236(+) m6A CDS//exon       24981863//27773535//22608085
chr1:180062267-180062268(+) m6A CDS//exon       24981863//22608085
chr1:180062285-180062286(+) m6A CDS//exon       24981863//22608085
chr1:180062295-180062296(+) m6A CDS//exon       24981863//22608085
chr1:180062303-180062304(+) m6A CDS//exon       24981863//22608085
chr1:180062334-180062335(+) m6A CDS//exon       24981863//22608085
chr1:180062610-180062611(+) m6A CDS//exon       22608085
chr1:180062667-180062668(+) m6A CDS//exon       22608085
chr1:180062794-180062795(+) m6A CDS//exon       24981863//22575960//22608085
chr1:180062838-180062839(+) m6A CDS//exon       24981863//22575960//22608085
chr1:180062860-180062861(+) m6A CDS//exon       24981863//22575960//22608085
chr1:180062945-180062946(+) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr1:180062963-180062964(+) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr1:180062981-180062982(+) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr1:180063047-180063048(+) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr1:180063148-180063149(+) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr1:180063164-180063165(+) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr1:180063236-180063237(+) m6A CDS//exon       24284625//24981863//22608085
chr1:180063242-180063243(+) m6A CDS//exon       24981863//22608085
chr1:180063422-180063423(+) m6A CDS//exon       24981863//22608085
chr1:180063474-180063475(+) m6A CDS//exon       24284625//24981863//22608085
chr1:180063506-180063507(+) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:180063533-180063534(+) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:180063565-180063566(+) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:180063638-180063639(+) m6A CDS//exon       24284625//22608085
chr1:180063660-180063661(+) m6A CDS//exon       24284625//22608085
chr1:180063747-180063748(+) m6A CDS//exon       22608085
chr1:180064692-180064693(+) m6A CDS//exon       24981863//22608085
chr1:180064704-180064705(+) m6A CDS//exon       24981863//22608085
chr1:180064713-180064714(+) m6A CDS//exon       24981863//22608085
chr1:180064719-180064720(+) m6A CDS//exon       24981863//22608085
chr1:180064760-180064761(+) m6A CDS//exon       24981863//22608085
chr1:180064775-180064776(+) m6A CDS//exon       24981863//22608085
chr1:180064825-180064826(+) m6A CDS//exon       24284625//24981863//22608085
chr1:180064848-180064849(+) m6A CDS//exon       24284625//24981863//22608085
chr1:180064879-180064880(+) m6A CDS//exon       24284625//24981863//22608085
chr1:180064944-180064945(+) m6A CDS//exon       24284625//24981863//22608085
chr1:180065001-180065002(+) m6A CDS//exon       24981863//22608085
chr1:180068049-180068050(+) m6A CDS//exon       -
chr1:180068057-180068058(+) m6A CDS//exon       -
chr1:180068100-180068101(+) m6A CDS//exon       22608085
chr1:180080168-180080169(+) m6A CDS//exon       24209618//24981863//22608085
chr1:180080224-180080225(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085
chr1:180080395-180080396(+) m6A 3'UTR//intron       24284625//24209618//24981863//22575960//22608085
chr1:180080416-180080417(+) m6A 3'UTR//intron       24284625//24209618//24981863//22575960//22608085
chr1:180080439-180080440(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr1:180080480-180080481(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr1:180080580-180080581(+) m6A 3'UTR//intron       24284625//24981863//22575960//22608085
chr1:180080605-180080606(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr1:180080715-180080716(+) m6A 3'UTR//intron       -
chr1:180080731-180080732(+) m6A 3'UTR//intron       22608085
chr1:180080741-180080742(+) m6A 3'UTR//intron       22608085
chr1:180080824-180080825(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr1:180080865-180080866(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr1:180080928-180080929(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr1:180080969-180080970(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr1:180080992-180080993(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr1:180081006-180081007(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr1:180081107-180081108(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr1:180081162-180081163(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr1:180081242-180081243(+) m6A 3'UTR//intron       24981863
chr1:180081438-180081439(+) m6A 3'UTR//intron       22608085
chr1:180081538-180081539(+) m6A 3'UTR//intron       24284625//24981863//22575960//22608085
chr1:180081617-180081618(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr1:180081659-180081660(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr1:180081799-180081800(+) m6A 3'UTR       22608085
chr1:180082865-180082866(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-let-7g-3p
Exosome Breast milk     22211110
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Serum     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cerebrospinal fluid     24797360
Microvesicle Colon cancer cell line (LIM1863)|Mesenchymal stem cells     -
CEP350
Centrosome Cells (HeLa-Kyoto|HeLa)     33649340
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-let-7g-3p
Interactor2: CEP350

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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