Detail Information

Basic Information:


  VIRBase ID:  

HHID00065626

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-let-7g-3p:           VEZF1:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsa-let-7g-3p VEZF1
miRBase
Accession/Entrez ID		 MIMAT0004584 7716
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - DB1//ZNF161

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-let-7g-3p
rs1022640944 chr3:52268290    G/A
rs1166657040 chr3:52268299    A/G
rs1356748432 chr3:52268293    C/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR VEZF1
chr17:56053342(-) A-I      intronic
chr17:56053274(-) A-I      intronic
chr17:56049794(-) A-I      3'UTR
chr17:56053353(-) A-I      intronic
chr17:56054574(-) A-I      intronic
chr17:56054586(-) A-I      intronic
chr17:56053333(-) A-I      intronic
chr17:56053335(-) A-I      intronic
chr17:56053328(-) A-I      intronic
chr17:56053313(-) A-I      intronic
chr17:56053275(-) A-I      intronic
chr17:56055145(-) A-I      intronic
chr17:56054755(-) A-I      intronic
chr17:56055093(-) A-I      intronic
chr17:56053231(-) A-I      intronic
chr17:56053235(-) A-I      intronic
chr17:56053329(-) A-I      intronic
chr17:56055105(-) A-I      intronic
chr17:56055129(-) A-I      intronic
chr17:56053281(-) A-I      intronic
chr17:56053242(-) A-I      intronic
chr17:56053292(-) A-I      intronic
chr17:56054570(-) A-I      intronic
chr17:56054602(-) A-I      intronic
chr17:56054704(-) A-I      intronic
chr17:56055198(-) A-I      intronic
chr17:56055424(-) A-I      intronic
chr17:56054715(-) A-I      intronic
chr17:56054575(-) A-I      intronic
chr17:56054747(-) A-I      intronic
chr17:56053324(-) A-I      intronic
chr17:56055445(-) A-I      intronic
chr17:56055464(-) A-I      intronic
chr17:56054616(-) A-I      intronic
chr17:56054629(-) A-I      intronic
chr17:56055407(-) A-I      intronic
chr17:56054701(-) A-I      intronic
chr17:56053276(-) A-I      intronic
chr17:56055507(-) A-I      intronic
chr17:56054593(-) A-I      intronic
chr17:56053330(-) A-I      intronic
chr17:56054760(-) A-I      intronic
chr17:56053232(-) A-I      intronic
chr17:56057201(-) A-I      intronic
chr17:56054963(-) A-I      intronic
chr17:56054594(-) A-I      intronic
chr17:56055481(-) A-I      intronic
chr17:56055367(-) A-I      intronic
chr17:56054767(-) A-I      intronic
chr17:56055502(-) A-I      intronic
chr17:56054580(-) A-I      intronic
chr17:56054739(-) A-I      intronic
chr17:56055329(-) A-I      intronic
chr17:56054598(-) A-I      intronic
chr17:56055294(-) A-I      intronic
chr17:56055564(-) A-I      intronic
chr17:56049829(-) A-I      3'UTR
chr17:56049824(-) A-I      3'UTR
chr17:56049823(-) A-I      3'UTR
chr17:56049825(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED VEZF1
chr17:56049824(-) A-I exon 3'UTR    19478186
chr17:56049829(-) A-I exon 3'UTR    19478186
chr17:56049823(-) A-I exon 3'UTR    21960545
chr17:56049829(-) A-G exon 3'UTR    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase VEZF1
chr17:56049263-56049264(-) m6A 3'UTR       24981863//22608085
chr17:56049290-56049291(-) m6A 3'UTR       24981863//22608085
chr17:56051013-56051014(-) m6A 3'UTR       24981863
chr17:56051032-56051033(-) m6A 3'UTR       24981863
chr17:56051517-56051518(-) m6A 3'UTR       27773535
chr17:56051537-56051538(-) m6A 3'UTR       27773535
chr17:56051553-56051554(-) m6A 3'UTR       27773535
chr17:56051592-56051593(-) m6A 3'UTR       27773535
chr17:56051641-56051642(-) m6A 3'UTR       27773535
chr17:56051751-56051752(-) m6A 3'UTR       24981863//27773535
chr17:56051832-56051833(-) m6A 3'UTR       24284625//24981863//27773535
chr17:56051890-56051891(-) m6A CDS       24284625//24981863//27773535
chr17:56052077-56052078(-) m6A CDS       24284625//24981863//27773535
chr17:56052158-56052159(-) m6A CDS       24284625//24981863//27773535
chr17:56052168-56052169(-) m6A CDS       24284625//24981863//27773535
chr17:56052240-56052241(-) m6A CDS       24284625//24981863//27773535
chr17:56056546-56056547(-) m6A CDS       24981863//27773535
chr17:56056554-56056555(-) m6A CDS       24981863//27773535
chr17:56056656-56056657(-) m6A CDS       24981863//27773535
chr17:56057979-56057980(-) m6A CDS       24981863//27773535
chr17:56058020-56058021(-) m6A CDS       27773535
chr17:56059248-56059249(-) m6A CDS       27773535
chr17:56059269-56059270(-) m6A CDS       27773535
chr17:56060097-56060098(-) m6A CDS       24981863//27773535
chr17:56060143-56060144(-) m6A CDS       24284625//24981863//27773535
chr17:56060187-56060188(-) m6A CDS       24284625//24981863//27773535
chr17:56060269-56060270(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr17:56060292-56060293(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr17:56060411-56060412(-) m6A 5'UTR//CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr17:56060422-56060423(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr17:56060465-56060466(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:56060533-56060534(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:56060573-56060574(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:56060580-56060581(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:56060615-56060616(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:56060634-56060635(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:56060664-56060665(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:56060713-56060714(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:56062636-56062637(-) m6A 5'UTR//intron       24284625//24209618//24981863//27371828
chr17:56062703-56062704(-) m6A 5'UTR//intron       24209618
chr17:56063463-56063464(-) m6A 5'UTR//intron       24209618
chr17:56065456-56065457(-) m6A 5'UTR//CDS       24209618//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-let-7g-3p
Exosome Breast milk     22211110
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Serum     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cerebrospinal fluid     24797360
Microvesicle Colon cancer cell line (LIM1863)|Mesenchymal stem cells     -
VEZF1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-let-7g-3p
Interactor2: VEZF1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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