Detail Information

Basic Information:


  VIRBase ID:  

HHID00065600

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-223-5p:           ZNF780A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-223-5p ZNF780A
miRBase
Accession/Entrez ID		 MIMAT0004570 284323
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ZNF780

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-223-5p
rs1240009384 chrX:66018913    A/T
rs1397275461 chrX:66018904    G/T
rs1464475149 chrX:66018916    T/C
rs761701581 chrX:66018906    C/G
rs772305537 chrX:66018909    G/A
rs774279244 chrX:66018895    C/T
rs890919635 chrX:66018896    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF780A
chr19:40591778(-) A-I      intronic
chr19:40591705(-) A-I      intronic
chr19:40574153(-) A-I      intronic
chr19:40591730(-) A-I      intronic
chr19:40592707(-) A-I      intronic
chr19:40592734(-) A-I      intronic
chr19:40573847(-) A-I      intronic
chr19:40574121(-) A-I      intronic
chr19:40591687(-) A-I      intronic
chr19:40589361(-) A-I      intronic
chr19:40592869(-) A-I      intronic
chr19:40592792(-) A-I      intronic
chr19:40592672(-) A-I      intronic
chr19:40591621(-) A-I      intronic
chr19:40574129(-) A-I      intronic
chr19:40589485(-) A-I      intronic
chr19:40591639(-) A-I      intronic
chr19:40589380(-) A-I      intronic
chr19:40591704(-) A-I      intronic
chr19:40592789(-) A-I      intronic
chr19:40574190(-) A-I      intronic
chr19:40589471(-) A-I      intronic
chr19:40574081(-) A-I      intronic
chr19:40591532(-) A-I      intronic
chr19:40574146(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF780A
chr19:40575645-40575646(-) m6A 3'UTR       24981863//27773535
chr19:40575657-40575658(-) m6A 3'UTR       24981863//27773535
chr19:40579646-40579647(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr19:40579667-40579668(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr19:40579736-40579737(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr19:40579880-40579881(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr19:40579899-40579900(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr19:40579927-40579928(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr19:40579983-40579984(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr19:40580011-40580012(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr19:40580048-40580049(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr19:40580122-40580123(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr19:40580179-40580180(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr19:40580262-40580263(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr19:40580346-40580347(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr19:40580383-40580384(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr19:40580450-40580451(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22608085
chr19:40580515-40580516(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr19:40580599-40580600(-) m6A CDS//intron       24284625//27773535//22608085
chr19:40580683-40580684(-) m6A CDS//intron       24981863//27773535//22608085
chr19:40580767-40580768(-) m6A CDS//intron       25456834//24981863//27773535//22608085
chr19:40580784-40580785(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr19:40580815-40580816(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr19:40580918-40580919(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr19:40580962-40580963(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr19:40581019-40581020(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr19:40581103-40581104(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr19:40581140-40581141(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr19:40581187-40581188(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr19:40581206-40581207(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr19:40581271-40581272(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr19:40581355-40581356(-) m6A CDS//intron       24981863//27773535//22608085
chr19:40581382-40581383(-) m6A CDS//intron       24981863//27773535//22608085
chr19:40581439-40581440(-) m6A CDS//intron       24981863//27773535//22608085
chr19:40581523-40581524(-) m6A CDS//intron       24981863//27773535//22608085
chr19:40581560-40581561(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr19:40581607-40581608(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr19:40581626-40581627(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr19:40581691-40581692(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr19:40581775-40581776(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr19:40581859-40581860(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr19:40581907-40581908(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr19:40581961-40581962(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr19:40581973-40581974(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr19:40582045-40582046(-) m6A CDS       24284625//24981863//27773535//22608085
chr19:40582096-40582097(-) m6A CDS       24284625//27773535//22608085
chr19:40587743-40587744(-) m6A CDS       27773535//22608085
chr19:40587804-40587805(-) m6A CDS       27773535
chr19:40589040-40589041(-) m6A CDS       27773535
chr19:40589068-40589069(-) m6A 5'UTR//CDS       27773535
chr19:40596118-40596119(-) m6A 5'UTR//intron       24981863
chr19:40596199-40596200(-) m6A 5'UTR//intron       24981863
chr19:40596693-40596694(-) m6A 5'UTR//intron       25456834//24981863//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-223-5p
Exosome Primary dendritic cells     21505438
Exosome Breast milk     22211110
Exosome Plasma     23663360
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
ZNF780A
Chromatin K562 cells     -
Exosome Blood     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-223-5p
Interactor2: ZNF780A

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...