Basic Information:

  VIRBase ID:  

HHID00065596

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-223-5p:  MIMAT0004570          TCEANC:  NM_152634     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-223-5p	TCEANC
miRBase Accession/Entrez ID	MIMAT0004570	170082
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-223-5p	rs1240009384 chrX:66018913    A/T rs1397275461 chrX:66018904    G/T rs1464475149 chrX:66018916    T/C rs761701581 chrX:66018906    C/G rs772305537 chrX:66018909    G/A rs774279244 chrX:66018895    C/T rs890919635 chrX:66018896    G/A

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TCEANC	chrX:13680729-13680730(+) m6A CDS//exon       24981863//22608085 chrX:13680762-13680763(+) m6A CDS//exon       24284625//24981863//22608085 chrX:13680799-13680800(+) m6A CDS//exon       24284625//24981863//22608085 chrX:13680870-13680871(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chrX:13680889-13680890(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chrX:13680938-13680939(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chrX:13680966-13680967(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chrX:13681016-13681017(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chrX:13681061-13681062(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chrX:13681149-13681150(+) m6A CDS//exon       24981863//22608085 chrX:13681225-13681226(+) m6A CDS//exon       24981863//22608085 chrX:13681273-13681274(+) m6A CDS//exon       24981863//22608085 chrX:13681290-13681291(+) m6A CDS//exon       24981863//22608085 chrX:13681324-13681325(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chrX:13681351-13681352(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chrX:13681365-13681366(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chrX:13681421-13681422(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chrX:13681466-13681467(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chrX:13681500-13681501(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chrX:13681566-13681567(+) m6A CDS//exon       24284625//24981863//22608085 chrX:13681600-13681601(+) m6A CDS//exon       24284625//24981863//22608085 chrX:13681610-13681611(+) m6A CDS//exon       24284625//24981863//22608085 chrX:13698709-13698710(+) m6A 3'UTR       - chrX:13699289-13699290(+) m6A 3'UTR       - chrX:13699306-13699307(+) m6A 3'UTR       - chrX:13699342-13699343(+) m6A 3'UTR       - chrX:13699361-13699362(+) m6A 3'UTR       - chrX:13699380-13699381(+) m6A 3'UTR       - chrX:13699397-13699398(+) m6A 3'UTR       - chrX:13699414-13699415(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-223-5p	Exosome Primary dendritic cells     21505438 Exosome Breast milk     22211110 Exosome Plasma     23663360 Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Fibroblasts|Mesenchymal stem cells     -
	TCEANC	Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-223-5p
Interactor2: TCEANC

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.