Detail Information

Basic Information:


  VIRBase ID:  

HHID00065589

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-223-5p:           ACBD5:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-223-5p ACBD5
miRBase
Accession/Entrez ID		 MIMAT0004570 91452
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - RDLKD

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-223-5p
rs1240009384 chrX:66018913    A/T
rs1397275461 chrX:66018904    G/T
rs1464475149 chrX:66018916    T/C
rs761701581 chrX:66018906    C/G
rs772305537 chrX:66018909    G/A
rs774279244 chrX:66018895    C/T
rs890919635 chrX:66018896    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ACBD5
chr10:27492196(-) A-I      intronic
chr10:27486749(-) A-I      intronic
chr10:27486708(-) A-I      intronic
chr10:27518357(-) A-I      intronic
chr10:27518373(-) A-I      intronic
chr10:27518372(-) A-I      intronic
chr10:27515786(-) A-I      intronic
chr10:27515777(-) A-I      intronic
chr10:27515752(-) A-I      intronic
chr10:27518377(-) A-I      intronic
chr10:27515745(-) A-I      intronic
chr10:27492929(-) A-I      intronic
chr10:27490583(-) A-I      intronic
chr10:27490584(-) A-I      intronic
chr10:27506572(-) A-I      intronic
chr10:27490588(-) A-I      intronic
chr10:27492036(-) A-I      intronic
chr10:27492116(-) A-I      intronic
chr10:27487849(-) A-I      intronic
chr10:27504909(-) A-I      intronic
chr10:27517954(-) A-I      intronic
chr10:27526823(-) A-I      intronic
chr10:27492134(-) A-I      intronic
chr10:27492142(-) A-I      intronic
chr10:27486682(-) A-I      intronic
chr10:27492560(-) A-I      intronic
chr10:27492663(-) A-I      intronic
chr10:27492975(-) A-I      intronic
chr10:27515648(-) A-I      intronic
chr10:27495627(-) A-I      intronic
chr10:27492822(-) A-I      intronic
chr10:27494732(-) A-I      intronic
chr10:27504017(-) A-I      intronic
chr10:27486635(-) A-I      intronic
chr10:27504007(-) A-I      intronic
chr10:27492842(-) A-I      intronic
chr10:27496048(-) A-I      intronic
chr10:27494734(-) A-I      intronic
chr10:27501221(-) A-I      intronic
chr10:27495325(-) A-I      intronic
chr10:27495328(-) A-I      intronic
chr10:27500521(-) A-I      intronic
chr10:27495354(-) A-I      intronic
chr10:27511719(-) A-I      intronic
chr10:27495377(-) A-I      intronic
chr10:27488016(-) A-I      intronic
chr10:27488809(-) A-I      intronic
chr10:27495724(-) A-I      intronic
chr10:27501121(-) A-I      intronic
chr10:27515751(-) A-I      intronic
chr10:27495569(-) A-I      intronic
chr10:27495591(-) A-I      intronic
chr10:27521354(-) A-I      intronic
chr10:27527991(-) A-I      intronic
chr10:27527970(-) A-I      intronic
chr10:27522897(-) A-I      intronic
chr10:27488032(-) A-I      intronic
chr10:27501115(-) A-I      intronic
chr10:27522890(-) A-I      intronic
chr10:27515776(-) A-I      intronic
chr10:27501112(-) A-I      intronic
chr10:27489459(-) A-I      intronic
chr10:27500420(-) A-I      intronic
chr10:27487962(-) A-I      intronic
chr10:27500418(-) A-I      intronic
chr10:27491957(-) A-I      intronic
chr10:27495622(-) A-I      intronic
chr10:27500413(-) A-I      intronic
chr10:27518354(-) A-I      intronic
chr10:27498471(-) A-I      intronic
chr10:27508082(-) A-I      intronic
chr10:27517885(-) A-I      intronic
chr10:27516704(-) A-I      intronic
chr10:27528840(-) A-I      intronic
chr10:27517475(-) A-I      intronic
chr10:27492957(-) A-I      intronic
chr10:27514090(-) A-I      intronic
chr10:27515891(-) A-I      intronic
chr10:27501652(-) A-I      intronic
chr10:27490538(-) A-I      intronic
chr10:27487955(-) A-I      intronic
chr10:27516699(-) A-I      intronic
chr10:27515701(-) A-I      intronic
chr10:27498460(-) A-I      intronic
chr10:27515672(-) A-I      intronic
chr10:27511596(-) A-I      intronic
chr10:27508237(-) A-I      intronic
chr10:27514184(-) A-I      intronic
chr10:27515646(-) A-I      intronic
chr10:27486722(-) A-I      intronic
chr10:27489471(-) A-I      intronic
chr10:27489564(-) A-I      intronic
chr10:27522552(-) A-I      intronic
chr10:27515628(-) A-I      intronic
chr10:27514207(-) A-I      intronic
chr10:27514191(-) A-I      intronic
chr10:27513725(-) A-I      intronic
chr10:27511597(-) A-I      intronic
chr10:27510825(-) A-I      intronic
chr10:27507653(-) A-I      intronic
chr10:27510747(-) A-I      intronic
chr10:27501034(-) A-I      intronic
chr10:27492812(-) A-I      intronic
chr10:27489567(-) A-I      intronic
chr10:27516816(-) A-I      intronic
chr10:27490005(-) A-I      intronic
chr10:27490006(-) A-I      intronic
chr10:27492133(-) A-I      intronic
chr10:27508234(-) A-I      intronic
chr10:27508149(-) A-I      intronic
chr10:27508119(-) A-I      intronic
chr10:27490023(-) A-I      intronic
chr10:27490649(-) A-I      intronic
chr10:27507794(-) A-I      intronic
chr10:27515721(-) A-I      intronic
chr10:27507739(-) A-I      intronic
chr10:27490024(-) A-I      intronic
chr10:27507679(-) A-I      intronic
chr10:27490515(-) A-I      intronic
chr10:27515719(-) A-I      intronic
chr10:27506622(-) A-I      intronic
chr10:27492815(-) A-I      intronic
chr10:27498151(-) A-I      intronic
chr10:27517358(-) A-I      intronic
chr10:27500520(-) A-I      intronic
chr10:27490566(-) A-I      intronic
chr10:27506589(-) A-I      intronic
chr10:27521436(-) A-I      intronic
chr10:27485060(-) A-I      3'UTR
chr10:27489566(-) A-I      intronic
chr10:27500426(-) A-I      intronic
chr10:27517894(-) A-I      intronic
chr10:27490009(-) A-I      intronic
chr10:27489854(-) A-I      intronic
chr10:27510686(-) A-I      intronic
chr10:27510784(-) A-I      intronic
chr10:27490030(-) A-I      intronic
chr10:27487986(-) A-I      intronic
chr10:27528004(-) A-I      intronic
chr10:27526777(-) A-I      intronic
chr10:27513877(-) A-I      intronic
chr10:27516780(-) A-I      intronic
chr10:27501744(-) A-I      intronic
chr10:27526773(-) A-I      intronic
chr10:27523737(-) A-I      intronic
chr10:27515810(-) A-I      intronic
chr10:27489916(-) A-I      intronic
chr10:27486714(-) A-I      intronic
chr10:27527961(-) A-I      intronic
chr10:27490042(-) A-I      intronic
chr10:27486802(-) A-I      intronic
chr10:27527071(-) A-I      intronic
chr10:27501660(-) A-I      intronic
chr10:27514185(-) A-I      intronic
chr10:27491901(-) A-I      intronic
chr10:27491995(-) A-I      intronic
chr10:27488855(-) A-I      intronic
chr10:27490048(-) A-I      intronic
chr10:27492174(-) A-I      intronic
chr10:27492006(-) A-I      intronic
chr10:27514073(-) A-I      intronic
chr10:27498406(-) A-I      intronic
chr10:27489944(-) A-I      intronic
chr10:27492839(-) A-I      intronic
chr10:27511676(-) A-I      intronic
chr10:27511738(-) A-I      intronic
chr10:27486752(-) A-I      intronic
chr10:27487874(-) A-I      intronic
chr10:27528074(-) A-I      intronic
chr10:27486769(-) A-I      intronic
chr10:27527870(-) A-I      intronic
chr10:27495701(-) A-I      intronic
chr10:27486787(-) A-I      intronic
chr10:27515855(-) A-I      intronic
chr10:27488756(-) A-I      intronic
chr10:27501048(-) A-I      intronic
chr10:27489904(-) A-I      intronic
chr10:27492076(-) A-I      intronic
chr10:27489633(-) A-I      intronic
chr10:27489512(-) A-I      intronic
chr10:27508148(-) A-I      intronic
chr10:27526817(-) A-I      intronic
chr10:27511602(-) A-I      intronic
chr10:27486684(-) A-I      intronic
chr10:27513848(-) A-I      intronic
chr10:27495488(-) A-I      intronic
chr10:27488257(-) A-I      intronic
chr10:27517384(-) A-I      intronic
chr10:27492042(-) A-I      intronic
chr10:27486713(-) A-I      intronic
chr10:27501649(-) A-I      intronic
chr10:27522091(-) A-I      intronic
chr10:27511608(-) A-I      intronic
chr10:27486697(-) A-I      intronic
chr10:27518001(-) A-I      intronic
chr10:27500423(-) A-I      intronic
chr10:27508091(-) A-I      intronic
chr10:27492190(-) A-I      intronic
chr10:27504906(-) A-I      intronic
chr10:27501111(-) A-I      intronic
chr10:27487797(-) A-I      intronic
chr10:27521469(-) A-I      intronic
chr10:27501653(-) A-I      intronic
chr10:27505405(-) A-I      intronic
chr10:27492138(-) A-I      intronic
chr10:27489661(-) A-I      intronic
chr10:27490506(-) A-I      intronic
chr10:27490620(-) A-I      intronic
chr10:27489866(-) A-I      intronic
chr10:27495110(-) A-I      intronic
chr10:27488216(-) A-I      intronic
chr10:27519682(-) A-I      intronic
chr10:27514187(-) A-I      intronic
chr10:27492816(-) A-I      intronic
chr10:27486736(-) A-I      intronic
chr10:27501750(-) A-I      intronic
chr10:27492170(-) A-I      intronic
chr10:27492005(-) A-I      intronic
chr10:27504797(-) A-I      intronic
chr10:27508059(-) A-I      intronic
chr10:27488871(-) A-I      intronic
chr10:27522099(-) A-I      intronic
chr10:27526661(-) A-I      intronic
chr10:27528050(-) A-I      intronic
chr10:27515677(-) A-I      intronic
chr10:27495039(-) A-I      intronic
chr10:27518399(-) A-I      intronic
chr10:27526646(-) A-I      intronic
chr10:27490085(-) A-I      intronic
chr10:27486672(-) A-I      intronic
chr10:27517785(-) A-I      intronic
chr10:27514034(-) A-I      intronic
chr10:27489470(-) A-I      intronic
chr10:27486642(-) A-I      intronic
chr10:27489845(-) A-I      intronic
chr10:27510680(-) A-I      intronic
chr10:27512670(-) A-I      intronic
chr10:27510694(-) A-I      intronic
chr10:27486810(-) A-I      intronic
chr10:27489441(-) A-I      intronic
chr10:27522960(-) A-I      intronic
chr10:27499624(-) A-I      intronic
chr10:27501110(-) A-I      intronic
chr10:27495463(-) A-I      intronic
chr10:27511669(-) A-I      intronic
chr10:27528849(-) A-I      intronic
chr10:27500387(-) A-I      intronic
chr10:27505130(-) A-I      intronic
chr10:27504871(-) A-I      intronic
chr10:27486704(-) A-I      intronic
chr10:27504900(-) A-I      intronic
chr10:27505207(-) A-I      intronic
chr10:27489884(-) A-I      intronic
chr10:27490632(-) A-I      intronic
chr10:27516813(-) A-I      intronic
chr10:27515666(-) A-I      intronic
chr10:27495541(-) A-I      intronic
chr10:27522535(-) A-I      intronic
chr10:27521439(-) A-I      intronic
chr10:27528057(-) A-I      intronic
chr10:27492990(-) A-I      intronic
chr10:27506526(-) A-I      intronic
chr10:27493066(-) A-I      intronic
chr10:27508083(-) A-I      intronic
chr10:27489883(-) A-I      intronic
chr10:27486826(-) A-I      intronic
chr10:27489552(-) A-I      intronic
chr10:27489570(-) A-I      intronic
chr10:27489576(-) A-I      intronic
chr10:27490569(-) A-I      intronic
chr10:27500388(-) A-I      intronic
chr10:27527964(-) A-I      intronic
chr10:27513860(-) A-I      intronic
chr10:27504932(-) A-I      intronic
chr10:27493042(-) A-I      intronic
chr10:27496039(-) A-I      intronic
chr10:27492502(-) A-I      intronic
chr10:27492000(-) A-I      intronic
chr10:27511693(-) A-I      intronic
chr10:27510671(-) A-I      intronic
chr10:27517467(-) A-I      intronic
chr10:27505206(-) A-I      intronic
chr10:27528836(-) A-I      intronic
chr10:27488212(-) A-I      intronic
chr10:27508013(-) A-I      intronic
chr10:27488842(-) A-I      intronic
chr10:27489918(-) A-I      intronic
chr10:27490731(-) A-I      intronic
chr10:27504893(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ACBD5
chr10:27488855(-) A-G intron -    22484847
chr10:27489441(-) A-G intron -    22484847
chr10:27489470(-) A-G intron -    22484847
chr10:27489883(-) A-G intron -    22484847
chr10:27489904(-) A-G intron -    22484847
chr10:27498151(-) A-G intron -    22484847
chr10:27501744(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ACBD5
chr10:27494149-27494150(-) m6A 3'UTR//CDS       27371828
chr10:27497198-27497199(-) m6A 3'UTR//CDS       27371828//27773536
chr10:27497207-27497208(-) m6A 3'UTR//CDS       27371828//27773536
chr10:27497229-27497230(-) m6A 3'UTR//CDS       24981863//27371828//27773536
chr10:27497240-27497241(-) m6A 3'UTR//CDS       24981863//27371828
chr10:27497344-27497345(-) m6A 3'UTR//CDS       24209618//24981863//27773535//27371828
chr10:27499755-27499756(-) Tm 3'UTR//CDS       -
chr10:27499775-27499776(-) m6A 3'UTR//CDS       24209618//24981863//27773535//27371828
chr10:27507084-27507085(-) m6A 3'UTR//CDS       24981863//27773535
chr10:27508664-27508665(-) m6A 3'UTR//CDS       24981863//27773535
chr10:27508747-27508748(-) m6A 3'UTR//CDS       24981863
chr10:27509313-27509314(-) m6A 3'UTR//intron       -
chr10:27529295-27529296(-) m6A 5'UTR//CDS       27371828
chr10:27529315-27529316(-) m6A 5'UTR//CDS       27371828
chr10:27529348-27529349(-) m6A 5'UTR//CDS       27371828
chr10:27529356-27529357(-) m6A 5'UTR//CDS       27371828
chr10:27529483-27529484(-) m6A 5'UTR//intron       24981863
chr10:27529618-27529619(-) m6A 5'UTR//intron       25456834//24981863
chr10:27529639-27529640(-) m6A 5'UTR//intron       25456834//24981863
chr10:27529719-27529720(-) m6A 5'UTR//intron       25456834//24981863
chr10:27529731-27529732(-) m6A 5'UTR//intron       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-223-5p
Exosome Primary dendritic cells     21505438
Exosome Breast milk     22211110
Exosome Plasma     23663360
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
ACBD5
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-223-5p
Interactor2: ACBD5

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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