Detail Information

Basic Information:


  VIRBase ID:  

HHID00065581

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-223-5p:           ZBTB10:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-223-5p ZBTB10
miRBase
Accession/Entrez ID		 MIMAT0004570 65986
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - RINZF

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-223-5p
rs1240009384 chrX:66018913    A/T
rs1397275461 chrX:66018904    G/T
rs1464475149 chrX:66018916    T/C
rs761701581 chrX:66018906    C/G
rs772305537 chrX:66018909    G/A
rs774279244 chrX:66018895    C/T
rs890919635 chrX:66018896    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZBTB10
chr8:81424897(+) A-I      intronic
chr8:81424804(+) A-I      intronic
chr8:81404853(+) A-I      intronic
chr8:81404843(+) A-I      intronic
chr8:81424850(+) A-I      intronic
chr8:81404832(+) A-I      intronic
chr8:81425451(+) A-I      intronic
chr8:81405263(+) A-I      intronic
chr8:81425420(+) A-I      intronic
chr8:81424786(+) A-I      intronic
chr8:81420025(+) A-I      intronic
chr8:81413379(+) A-I      intronic
chr8:81405797(+) A-I      intronic
chr8:81405302(+) A-I      intronic
chr8:81405297(+) A-I      intronic
chr8:81405293(+) A-I      intronic
chr8:81405272(+) A-I      intronic
chr8:81425446(+) A-I      intronic
chr8:81420036(+) A-I      intronic
chr8:81405301(+) A-I      intronic
chr8:81419771(+) A-I      intronic
chr8:81405329(+) A-I      intronic
chr8:81413182(+) A-I      intronic
chr8:81404986(+) A-I      intronic
chr8:81405412(+) A-I      intronic
chr8:81413156(+) A-I      intronic
chr8:81419770(+) A-I      intronic
chr8:81413362(+) A-I      intronic
chr8:81419799(+) A-I      intronic
chr8:81402604(+) A-I      intronic
chr8:81413139(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZBTB10
chr8:81405301(+) A-G intron -    22484847
chr8:81405329(+) A-G intron -    22484847
chr8:81405412(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZBTB10
chr8:81397972-81397973(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr8:81398074-81398075(+) m6A 5'UTR//CDS       24284625//24209618//25456834//27371828//22608085
chr8:81398600-81398601(+) m6A 5'UTR//intron       22608085
chr8:81398870-81398871(+) m6A 5'UTR//intron       25456834//27371828//27773536//22608085
chr8:81398929-81398930(+) m6A 5'UTR//intron       25456834//24981863//27371828//27773536//22608085
chr8:81398955-81398956(+) m6A 5'UTR//intron       25456834//24981863//27371828//27773536//22608085
chr8:81399064-81399065(+) m6A CDS//intron       24209618//25456834//24981863//22608085
chr8:81399127-81399128(+) m6A CDS//intron       24209618//25456834//24981863//22608085
chr8:81399179-81399180(+) m6A CDS//intron       24209618//25456834//24981863//22608085
chr8:81399271-81399272(+) m6A CDS//intron       24209618//25456834//24981863//22608085
chr8:81399400-81399401(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085
chr8:81399408-81399409(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085
chr8:81399477-81399478(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085
chr8:81399732-81399733(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085
chr8:81399798-81399799(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr8:81399814-81399815(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr8:81399876-81399877(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr8:81399901-81399902(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr8:81399939-81399940(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr8:81399957-81399958(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr8:81399995-81399996(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr8:81411786-81411787(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr8:81411823-81411824(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr8:81411894-81411895(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr8:81411926-81411927(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr8:81411945-81411946(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr8:81411966-81411967(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr8:81412020-81412021(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22608085
chr8:81412115-81412116(+) m6A CDS       24284625//24981863//26404942//22608085
chr8:81412188-81412189(+) m6A CDS       24284625//24981863//22608085
chr8:81412204-81412205(+) m6A CDS       24284625//24981863//27773535//22608085
chr8:81412344-81412345(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr8:81412418-81412419(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr8:81412466-81412467(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr8:81412475-81412476(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr8:81412488-81412489(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr8:81412493-81412494(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr8:81412612-81412613(+) m6A CDS       24981863//22608085
chr8:81430794-81430795(+) m6A CDS       24284625//27773535//22608085
chr8:81430801-81430802(+) m6A CDS       24284625//27773535//22608085
chr8:81431037-81431038(+) m6A CDS       24284625//27773535//22608085
chr8:81431084-81431085(+) m6A CDS       24284625//24981863//27773535//22608085
chr8:81431149-81431150(+) m6A CDS       24284625//24981863//27773535//22608085
chr8:81431167-81431168(+) m6A CDS       24284625//24981863//27773535//22608085
chr8:81431179-81431180(+) m6A CDS       24284625//24981863//27773535//22608085
chr8:81431534-81431535(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085
chr8:81431566-81431567(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085
chr8:81431615-81431616(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085
chr8:81431799-81431800(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr8:81431831-81431832(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr8:81431887-81431888(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr8:81431941-81431942(+) m6A 3'UTR       24284625//24981863//22608085
chr8:81431953-81431954(+) m6A 3'UTR       24284625//24981863//22608085
chr8:81432317-81432318(+) m6A 3'UTR       24981863//22608085
chr8:81432381-81432382(+) m6A 3'UTR       24981863//22608085
chr8:81432407-81432408(+) m6A 3'UTR       24981863//22608085
chr8:81434933-81434934(+) m6A 3'UTR       27773535
chr8:81434990-81434991(+) m6A 3'UTR       27773535//22608085
chr8:81435059-81435060(+) m6A 3'UTR       24981863//27773535//22608085
chr8:81435172-81435173(+) m6A 3'UTR       22608085
chr8:81436191-81436192(+) m6A 3'UTR       27773535
chr8:81436203-81436204(+) m6A 3'UTR       27773535
chr8:81436212-81436213(+) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-223-5p
Exosome Primary dendritic cells     21505438
Exosome Breast milk     22211110
Exosome Plasma     23663360
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
ZBTB10
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-223-5p
Interactor2: ZBTB10

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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