Detail Information

Basic Information:


  VIRBase ID:  

HHID00065563

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-223-5p:           DYM:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-223-5p DYM
miRBase
Accession/Entrez ID		 MIMAT0004570 54808
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - DMC//SMC

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-223-5p
rs1240009384 chrX:66018913    A/T
rs1397275461 chrX:66018904    G/T
rs1464475149 chrX:66018916    T/C
rs761701581 chrX:66018906    C/G
rs772305537 chrX:66018909    G/A
rs774279244 chrX:66018895    C/T
rs890919635 chrX:66018896    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DYM
chr18:46689801(-) A-I      intronic
chr18:46845303(-) A-I      intronic
chr18:46845359(-) A-I      intronic
chr18:46689805(-) A-I      intronic
chr18:46689827(-) A-I      intronic
chr18:46845343(-) A-I      intronic
chr18:46845370(-) A-I      intronic
chr18:46913472(-) A-I      intronic
chr18:46913485(-) A-I      intronic
chr18:46913503(-) A-I      intronic
chr18:46845350(-) A-I      intronic
chr18:46926538(-) A-I      intronic
chr18:46689821(-) A-I      intronic
chr18:46968839(-) A-I      intronic
chr18:46768636(-) A-I      intronic
chr18:46612264(-) A-I      intronic
chr18:46590094(-) A-I      intronic
chr18:46573244(-) A-I      intronic
chr18:46573233(-) A-I      intronic
chr18:46573203(-) A-I      intronic
chr18:46573078(-) A-I      intronic
chr18:46573013(-) A-I      intronic
chr18:46572997(-) A-I      intronic
chr18:46760732(-) A-I      intronic
chr18:46760719(-) A-I      intronic
chr18:46760718(-) A-I      intronic
chr18:46760399(-) A-I      intronic
chr18:46760377(-) A-I      intronic
chr18:46760271(-) A-I      intronic
chr18:46759667(-) A-I      intronic
chr18:46759629(-) A-I      intronic
chr18:46759607(-) A-I      intronic
chr18:46759568(-) A-I      intronic
chr18:46758944(-) A-I      intronic
chr18:46758915(-) A-I      intronic
chr18:46758892(-) A-I      intronic
chr18:46758891(-) A-I      intronic
chr18:46758868(-) A-I      intronic
chr18:46758863(-) A-I      intronic
chr18:46758785(-) A-I      intronic
chr18:46734398(-) A-I      intronic
chr18:46734335(-) A-I      intronic
chr18:46686034(-) A-I      intronic
chr18:46943701(-) A-I      intronic
chr18:46686008(-) A-I      intronic
chr18:46943778(-) A-I      intronic
chr18:46944265(-) A-I      intronic
chr18:46944281(-) A-I      intronic
chr18:46945488(-) A-I      intronic
chr18:46968656(-) A-I      intronic
chr18:46969312(-) A-I      intronic
chr18:46969324(-) A-I      intronic
chr18:46969338(-) A-I      intronic
chr18:46917046(-) A-I      intronic
chr18:46917048(-) A-I      intronic
chr18:46845268(-) A-I      intronic
chr18:46917054(-) A-I      intronic
chr18:46926489(-) A-I      intronic
chr18:46926584(-) A-I      intronic
chr18:46926590(-) A-I      intronic
chr18:46930502(-) A-I      intronic
chr18:46930615(-) A-I      intronic
chr18:46930657(-) A-I      intronic
chr18:46932723(-) A-I      intronic
chr18:46842614(-) A-I      intronic
chr18:46844884(-) A-I      intronic
chr18:46845261(-) A-I      intronic
chr18:46686086(-) A-I      intronic
chr18:46845319(-) A-I      intronic
chr18:46842569(-) A-I      intronic
chr18:46845381(-) A-I      intronic
chr18:46847031(-) A-I      intronic
chr18:46847102(-) A-I      intronic
chr18:46847122(-) A-I      intronic
chr18:46862300(-) A-I      intronic
chr18:46877541(-) A-I      intronic
chr18:46914464(-) A-I      intronic
chr18:46914697(-) A-I      intronic
chr18:46915999(-) A-I      intronic
chr18:46916023(-) A-I      intronic
chr18:46916031(-) A-I      intronic
chr18:46916118(-) A-I      intronic
chr18:46916154(-) A-I      intronic
chr18:46916689(-) A-I      intronic
chr18:46932809(-) A-I      intronic
chr18:46932830(-) A-I      intronic
chr18:46932831(-) A-I      intronic
chr18:46936574(-) A-I      intronic
chr18:46936607(-) A-I      intronic
chr18:46941690(-) A-I      intronic
chr18:46943630(-) A-I      intronic
chr18:46943687(-) A-I      intronic
chr18:46916753(-) A-I      intronic
chr18:46916798(-) A-I      intronic
chr18:46916967(-) A-I      intronic
chr18:46917044(-) A-I      intronic
chr18:46943695(-) A-I      intronic
chr18:46943696(-) A-I      intronic
chr18:46815068(-) A-I      intronic
chr18:46842613(-) A-I      intronic
chr18:46790030(-) A-I      intronic
chr18:46790016(-) A-I      intronic
chr18:46789988(-) A-I      intronic
chr18:46789933(-) A-I      intronic
chr18:46789617(-) A-I      intronic
chr18:46789581(-) A-I      intronic
chr18:46768676(-) A-I      intronic
chr18:46768656(-) A-I      intronic
chr18:46768614(-) A-I      intronic
chr18:46941463(-) A-I      intronic
chr18:46931307(-) A-I      intronic
chr18:46959047(-) A-I      intronic
chr18:46926488(-) A-I      intronic
chr18:46759148(-) A-I      intronic
chr18:46734522(-) A-I      intronic
chr18:46943793(-) A-I      intronic
chr18:46932685(-) A-I      intronic
chr18:46845380(-) A-I      intronic
chr18:46915986(-) A-I      intronic
chr18:46916700(-) A-I      intronic
chr18:46584867(-) A-I      intronic
chr18:46943747(-) A-I      intronic
chr18:46845309(-) A-I      intronic
chr18:46584765(-) A-I      intronic
chr18:46916705(-) A-I      intronic
chr18:46759161(-) A-I      intronic
chr18:46913562(-) A-I      intronic
chr18:46844822(-) A-I      intronic
chr18:46845299(-) A-I      intronic
chr18:46759587(-) A-I      intronic
chr18:46916144(-) A-I      intronic
chr18:46943582(-) A-I      intronic
chr18:46686001(-) A-I      intronic
chr18:46732368(-) A-I      intronic
chr18:46789887(-) A-I      intronic
chr18:46760781(-) A-I      intronic
chr18:46758812(-) A-I      intronic
chr18:46941476(-) A-I      intronic
chr18:46962636(-) A-I      intronic
chr18:46769790(-) A-I      intronic
chr18:46576625(-) A-I      intronic
chr18:46758734(-) A-I      intronic
chr18:46914637(-) A-I      intronic
chr18:46913410(-) A-I      intronic
chr18:46759139(-) A-I      intronic
chr18:46647252(-) A-I      intronic
chr18:46943683(-) A-I      intronic
chr18:46612225(-) A-I      intronic
chr18:46844910(-) A-I      intronic
chr18:46917164(-) A-I      intronic
chr18:46913484(-) A-I      intronic
chr18:46913811(-) A-I      intronic
chr18:46943657(-) A-I      intronic
chr18:46913490(-) A-I      intronic
chr18:46769952(-) A-I      intronic
chr18:46759548(-) A-I      intronic
chr18:46759688(-) A-I      intronic
chr18:46916988(-) A-I      intronic
chr18:46926493(-) A-I      intronic
chr18:46917059(-) A-I      intronic
chr18:46916534(-) A-I      intronic
chr18:46768684(-) A-I      intronic
chr18:46916578(-) A-I      intronic
chr18:46972535(-) A-I      intronic
chr18:46944330(-) A-I      intronic
chr18:46916599(-) A-I      intronic
chr18:46844909(-) A-I      intronic
chr18:46944308(-) A-I      intronic
chr18:46576553(-) A-I      intronic
chr18:46789653(-) A-I      intronic
chr18:46845339(-) A-I      intronic
chr18:46734467(-) A-I      intronic
chr18:46959060(-) A-I      intronic
chr18:46916563(-) A-I      intronic
chr18:46916532(-) A-I      intronic
chr18:46943723(-) A-I      intronic
chr18:46914615(-) A-I      intronic
chr18:46758806(-) A-I      intronic
chr18:46972581(-) A-I      intronic
chr18:46844745(-) A-I      intronic
chr18:46732416(-) A-I      intronic
chr18:46910811(-) A-I      intronic
chr18:46613263(-) A-I      intronic
chr18:46916743(-) A-I      intronic
chr18:46613327(-) A-I      intronic
chr18:46916171(-) A-I      intronic
chr18:46914693(-) A-I      intronic
chr18:46844746(-) A-I      intronic
chr18:46942221(-) A-I      intronic
chr18:46959256(-) A-I      intronic
chr18:46739030(-) A-I      intronic
chr18:46913839(-) A-I      intronic
chr18:46944318(-) A-I      intronic
chr18:46760240(-) A-I      intronic
chr18:46941422(-) A-I      intronic
chr18:46888224(-) A-I      intronic
chr18:46844825(-) A-I      intronic
chr18:46941469(-) A-I      intronic
chr18:46917056(-) A-I      intronic
chr18:46936564(-) A-I      intronic
chr18:46759577(-) A-I      intronic
chr18:46732507(-) A-I      intronic
chr18:46769778(-) A-I      intronic
chr18:46926342(-) A-I      intronic
chr18:46845308(-) A-I      intronic
chr18:46888685(-) A-I      intronic
chr18:46759565(-) A-I      intronic
chr18:46876976(-) A-I      intronic
chr18:46888233(-) A-I      intronic
chr18:46916102(-) A-I      intronic
chr18:46690000(-) A-I      intronic
chr18:46758802(-) A-I      intronic
chr18:46916117(-) A-I      intronic
chr18:46790012(-) A-I      intronic
chr18:46862430(-) A-I      intronic
chr18:46916628(-) A-I      intronic
chr18:46926512(-) A-I      intronic
chr18:46959243(-) A-I      intronic
chr18:46789627(-) A-I      intronic
chr18:46964322(-) A-I      intronic
chr18:46915978(-) A-I      intronic
chr18:46759235(-) A-I      intronic
chr18:46964402(-) A-I      intronic
chr18:46961496(-) A-I      intronic
chr18:46916094(-) A-I      intronic
chr18:46936605(-) A-I      intronic
chr18:46914449(-) A-I      intronic
chr18:46916688(-) A-I      intronic
chr18:46844796(-) A-I      intronic
chr18:46943611(-) A-I      intronic
chr18:46913825(-) A-I      intronic
chr18:46914669(-) A-I      intronic
chr18:46914534(-) A-I      intronic
chr18:46888508(-) A-I      intronic
chr18:46758729(-) A-I      intronic
chr18:46943746(-) A-I      intronic
chr18:46914480(-) A-I      intronic
chr18:46910751(-) A-I      intronic
chr18:46760580(-) A-I      intronic
chr18:46944347(-) A-I      intronic
chr18:46722547(-) A-I      intronic
chr18:46914578(-) A-I      intronic
chr18:46943665(-) A-I      intronic
chr18:46943602(-) A-I      intronic
chr18:46932695(-) A-I      intronic
chr18:46760642(-) A-I      intronic
chr18:46961478(-) A-I      intronic
chr18:46910830(-) A-I      intronic
chr18:46916548(-) A-I      intronic
chr18:46583285(-) A-I      intronic
chr18:46845448(-) A-I      intronic
chr18:46913469(-) A-I      intronic
chr18:46926599(-) A-I      intronic
chr18:46844880(-) A-I      intronic
chr18:46584861(-) A-I      intronic
chr18:46613258(-) A-I      intronic
chr18:46844868(-) A-I      intronic
chr18:46945565(-) A-I      intronic
chr18:46943733(-) A-I      intronic
chr18:46943650(-) A-I      intronic
chr18:46734280(-) A-I      intronic
chr18:46914545(-) A-I      intronic
chr18:46912060(-) A-I      intronic
chr18:46760744(-) A-I      intronic
chr18:46846913(-) A-I      intronic
chr18:46789761(-) A-I      intronic
chr18:46936629(-) A-I      intronic
chr18:46930560(-) A-I      intronic
chr18:46789975(-) A-I      intronic
chr18:46946603(-) A-I      intronic
chr18:46768579(-) A-I      intronic
chr18:46913487(-) A-I      intronic
chr18:46789907(-) A-I      intronic
chr18:46769852(-) A-I      intronic
chr18:46768599(-) A-I      intronic
chr18:46876954(-) A-I      intronic
chr18:46845335(-) A-I      intronic
chr18:46912182(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DYM
chr18:46944308(-) A-I intron -    15258596
chr18:46944318(-) A-I intron -    15258596
chr18:46944330(-) A-I intron -    15258596
chr18:46916005(-) A-I intron -    22327324
chr18:46916563(-) A-I intron -    22327324
chr18:46916599(-) A-I intron -    22327324
chr18:46844870(-) A-G intron -    22484847
chr18:46844880(-) A-G intron -    22484847
chr18:46846913(-) A-G intron -    22484847
chr18:46914656(-) A-G intron -    22484847
chr18:46915975(-) A-G intron -    22484847
chr18:46915978(-) A-G intron -    22484847
chr18:46916005(-) A-G intron -    22484847
chr18:46916157(-) A-G intron -    22484847
chr18:46916171(-) A-G intron -    22484847
chr18:46916599(-) A-G intron -    22484847
chr18:46943564(-) G-T intron -    22484847
chr18:46943683(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DYM
chr18:46570400-46570401(-) m6A 3'UTR       -
chr18:46570455-46570456(-) m6A 3'UTR//CDS       -
chr18:46645204-46645205(-) m6A CDS       27773535
chr18:46645288-46645289(-) m6A CDS       27773535
chr18:46690114-46690115(-) m6A CDS       27773535
chr18:46812811-46812812(-) m6A CDS       27773535
chr18:46812834-46812835(-) m6A 3'UTR//CDS//exon       27773535
chr18:46812844-46812845(-) m6A 3'UTR//CDS//exon       27773535
chr18:46858347-46858348(-) m6A 3'UTR//CDS//exon//intron       27773535
chr18:46858357-46858358(-) m6A 3'UTR//CDS//exon//intron       27773535
chr18:46986899-46986900(-) m6A 5'UTR//exon//intron       27371828//27773536
chr18:46986934-46986935(-) m6A 5'UTR//exon//intron       27371828//27773536
chr18:46987114-46987115(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-223-5p
Exosome Primary dendritic cells     21505438
Exosome Breast milk     22211110
Exosome Plasma     23663360
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
DYM
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-223-5p
Interactor2: DYM

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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