Detail Information

Basic Information:


  VIRBase ID:  

HHID00065539

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-223-5p:           GNA13:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-223-5p GNA13
miRBase
Accession/Entrez ID		 MIMAT0004570 10672
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - G13

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-223-5p
rs1240009384 chrX:66018913    A/T
rs1397275461 chrX:66018904    G/T
rs1464475149 chrX:66018916    T/C
rs761701581 chrX:66018906    C/G
rs772305537 chrX:66018909    G/A
rs774279244 chrX:66018895    C/T
rs890919635 chrX:66018896    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GNA13
chr17:63045485(-) A-I      intronic
chr17:63049088(-) A-I      intronic
chr17:63034603(-) A-I      intronic
chr17:63034588(-) A-I      intronic
chr17:63034579(-) A-I      intronic
chr17:63034578(-) A-I      intronic
chr17:63034564(-) A-I      intronic
chr17:63034558(-) A-I      intronic
chr17:63020236(-) A-I      intronic
chr17:63020231(-) A-I      intronic
chr17:63034566(-) A-I      intronic
chr17:63040250(-) A-I      intronic
chr17:63042469(-) A-I      intronic
chr17:63042485(-) A-I      intronic
chr17:63042519(-) A-I      intronic
chr17:63043387(-) A-I      intronic
chr17:63043406(-) A-I      intronic
chr17:63045333(-) A-I      intronic
chr17:63045356(-) A-I      intronic
chr17:63045455(-) A-I      intronic
chr17:63045466(-) A-I      intronic
chr17:63012752(-) A-I      intronic
chr17:63045489(-) A-I      intronic
chr17:63048368(-) A-I      intronic
chr17:63048396(-) A-I      intronic
chr17:63048447(-) A-I      intronic
chr17:63048449(-) A-I      intronic
chr17:63048450(-) A-I      intronic
chr17:63048451(-) A-I      intronic
chr17:63048545(-) A-I      intronic
chr17:63048964(-) A-I      intronic
chr17:63049005(-) A-I      intronic
chr17:63049045(-) A-I      intronic
chr17:63049098(-) A-I      intronic
chr17:63012753(-) A-I      intronic
chr17:63020205(-) A-I      intronic
chr17:63020259(-) A-I      intronic
chr17:63020276(-) A-I      intronic
chr17:63020308(-) A-I      intronic
chr17:63021166(-) A-I      intronic
chr17:63021171(-) A-I      intronic
chr17:63021980(-) A-I      intronic
chr17:63021992(-) A-I      intronic
chr17:63022009(-) A-I      intronic
chr17:63023006(-) A-I      intronic
chr17:63023018(-) A-I      intronic
chr17:63023090(-) A-I      intronic
chr17:63030555(-) A-I      intronic
chr17:63029080(-) A-I      intronic
chr17:63039678(-) A-I      intronic
chr17:63029129(-) A-I      intronic
chr17:63029143(-) A-I      intronic
chr17:63029146(-) A-I      intronic
chr17:63029147(-) A-I      intronic
chr17:63029172(-) A-I      intronic
chr17:63029193(-) A-I      intronic
chr17:63029198(-) A-I      intronic
chr17:63029982(-) A-I      intronic
chr17:63030048(-) A-I      intronic
chr17:63030049(-) A-I      intronic
chr17:63011599(-) A-I      intronic
chr17:63030581(-) A-I      intronic
chr17:63031076(-) A-I      intronic
chr17:63031085(-) A-I      intronic
chr17:63031169(-) A-I      intronic
chr17:63032607(-) A-I      intronic
chr17:63032632(-) A-I      intronic
chr17:63032652(-) A-I      intronic
chr17:63032660(-) A-I      intronic
chr17:63032742(-) A-I      intronic
chr17:63034278(-) A-I      intronic
chr17:63034316(-) A-I      intronic
chr17:63034412(-) A-I      intronic
chr17:63034474(-) A-I      intronic
chr17:63034693(-) A-I      intronic
chr17:63034772(-) A-I      intronic
chr17:63039436(-) A-I      intronic
chr17:63039466(-) A-I      intronic
chr17:63011536(-) A-I      intronic
chr17:63011622(-) A-I      intronic
chr17:63011659(-) A-I      intronic
chr17:63011673(-) A-I      intronic
chr17:63011780(-) A-I      intronic
chr17:63012518(-) A-I      intronic
chr17:63012643(-) A-I      intronic
chr17:63039632(-) A-I      intronic
chr17:63039677(-) A-I      intronic
chr17:63012684(-) A-I      intronic
chr17:63040154(-) A-I      intronic
chr17:63045476(-) A-I      intronic
chr17:63022021(-) A-I      intronic
chr17:63029928(-) A-I      intronic
chr17:63039561(-) A-I      intronic
chr17:63012673(-) A-I      intronic
chr17:63030129(-) A-I      intronic
chr17:63024401(-) A-I      intronic
chr17:63029968(-) A-I      intronic
chr17:63048400(-) A-I      intronic
chr17:63029959(-) A-I      intronic
chr17:63032741(-) A-I      intronic
chr17:63034771(-) A-I      intronic
chr17:63021117(-) A-I      intronic
chr17:63034628(-) A-I      intronic
chr17:63029987(-) A-I      intronic
chr17:63039684(-) A-I      intronic
chr17:63030591(-) A-I      intronic
chr17:63030123(-) A-I      intronic
chr17:63029066(-) A-I      intronic
chr17:63038817(-) A-I      intronic
chr17:63034795(-) A-I      intronic
chr17:63030127(-) A-I      intronic
chr17:63030009(-) A-I      intronic
chr17:63023035(-) A-I      intronic
chr17:63027905(-) A-I      intronic
chr17:63039569(-) A-I      intronic
chr17:63029888(-) A-I      intronic
chr17:63049059(-) A-I      intronic
chr17:63034593(-) A-I      intronic
chr17:63011122(-) A-I      intronic
chr17:63029946(-) A-I      intronic
chr17:63012755(-) A-I      intronic
chr17:63045456(-) A-I      intronic
chr17:63030695(-) A-I      intronic
chr17:63029889(-) A-I      intronic
chr17:63029032(-) A-I      intronic
chr17:63029965(-) A-I      intronic
chr17:63039533(-) A-I      intronic
chr17:63045325(-) A-I      intronic
chr17:63049033(-) A-I      intronic
chr17:63048982(-) A-I      intronic
chr17:63030054(-) A-I      intronic
chr17:63029974(-) A-I      intronic
chr17:63012769(-) A-I      intronic
chr17:63032621(-) A-I      intronic
chr17:63011126(-) A-I      intronic
chr17:63023075(-) A-I      intronic
chr17:63048344(-) A-I      intronic
chr17:63021175(-) A-I      intronic
chr17:63011128(-) A-I      intronic
chr17:63021234(-) A-I      intronic
chr17:63021129(-) A-I      intronic
chr17:63045343(-) A-I      intronic
chr17:63023512(-) A-I      intronic
chr17:63039572(-) A-I      intronic
chr17:63040153(-) A-I      intronic
chr17:63024177(-) A-I      intronic
chr17:63049062(-) A-I      intronic
chr17:63042547(-) A-I      intronic
chr17:63045352(-) A-I      intronic
chr17:63023539(-) A-I      intronic
chr17:63011167(-) A-I      intronic
chr17:63042557(-) A-I      intronic
chr17:63034413(-) A-I      intronic
chr17:63020151(-) A-I      intronic
chr17:63012616(-) A-I      intronic
chr17:63029107(-) A-I      intronic
chr17:63021863(-) A-I      intronic
chr17:63045366(-) A-I      intronic
chr17:63031041(-) A-I      intronic
chr17:63047633(-) A-I      intronic
chr17:63032606(-) A-I      intronic
chr17:63031176(-) A-I      intronic
chr17:63034458(-) A-I      intronic
chr17:63049001(-) A-I      intronic
chr17:63029063(-) A-I      intronic
chr17:63040200(-) A-I      intronic
chr17:63023522(-) A-I      intronic
chr17:63021982(-) A-I      intronic
chr17:63024411(-) A-I      intronic
chr17:63034572(-) A-I      intronic
chr17:63029105(-) A-I      intronic
chr17:63048345(-) A-I      intronic
chr17:63024445(-) A-I      intronic
chr17:63023095(-) A-I      intronic
chr17:63011140(-) A-I      intronic
chr17:63040128(-) A-I      intronic
chr17:63012617(-) A-I      intronic
chr17:63045452(-) A-I      intronic
chr17:63031042(-) A-I      intronic
chr17:63011202(-) A-I      intronic
chr17:63028994(-) A-I      intronic
chr17:63024426(-) A-I      intronic
chr17:63021893(-) A-I      intronic
chr17:63048979(-) A-I      intronic
chr17:63040108(-) A-I      intronic
chr17:63049023(-) A-I      intronic
chr17:63021305(-) A-I      intronic
chr17:63023061(-) A-I      intronic
chr17:63021112(-) A-I      intronic
chr17:63011163(-) A-I      intronic
chr17:63020168(-) A-I      intronic
chr17:63011591(-) A-I      intronic
chr17:63022028(-) A-I      intronic
chr17:63021215(-) A-I      intronic
chr17:63022004(-) A-I      intronic
chr17:63042636(-) A-I      intronic
chr17:63021956(-) A-I      intronic
chr17:63032810(-) A-I      intronic
chr17:63011613(-) A-I      intronic
chr17:63020227(-) A-I      intronic
chr17:63034836(-) A-I      intronic
chr17:63012577(-) A-I      intronic
chr17:63011184(-) A-I      intronic
chr17:63045324(-) A-I      intronic
chr17:63034811(-) A-I      intronic
chr17:63021289(-) A-I      intronic
chr17:63034336(-) A-I      intronic
chr17:63040139(-) A-I      intronic
chr17:63023069(-) A-I      intronic
chr17:63024444(-) A-I      intronic
chr17:63021265(-) A-I      intronic
chr17:63012576(-) A-I      intronic
chr17:63034796(-) A-I      intronic
chr17:63024055(-) A-I      intronic
chr17:63034409(-) A-I      intronic
chr17:63033845(-) A-I      intronic
chr17:63023109(-) A-I      intronic
chr17:63023064(-) A-I      intronic
chr17:63034565(-) A-I      intronic
chr17:63038798(-) A-I      intronic
chr17:63049480(-) A-I      intronic
chr17:63045388(-) A-I      intronic
chr17:63036043(-) A-I      intronic
chr17:63023538(-) A-I      intronic
chr17:63034438(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GNA13
chr17:63029888(-) A-I intron -    22028664
chr17:63029889(-) A-I intron -    22028664
chr17:63029928(-) A-I intron -    22028664
chr17:63029946(-) A-I intron -    22028664
chr17:63029959(-) A-I intron -    22028664
chr17:63029965(-) A-I intron -    22028664
chr17:63029968(-) A-I intron -    22028664
chr17:63029974(-) A-I intron -    22028664
chr17:63029987(-) A-I intron -    22028664
chr17:63030009(-) A-I intron -    22028664
chr17:63030054(-) A-I intron -    22028664
chr17:63030123(-) A-I intron -    22028664
chr17:63030127(-) A-I intron -    22028664
chr17:63030129(-) A-I intron -    22028664
chr17:63021129(-) A-G intron -    22484847
chr17:63021305(-) A-G intron -    22484847
chr17:63031041(-) A-G intron -    22484847
chr17:63031042(-) A-G intron -    22484847
chr17:63040128(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GNA13
chr17:63009884-63009885(-) Y 3'UTR       26075521
chr17:63010062-63010063(-) m6A 3'UTR       24284625
chr17:63010102-63010103(-) m6A 3'UTR       24284625
chr17:63010121-63010122(-) m6A 3'UTR       24284625
chr17:63010278-63010279(-) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085
chr17:63010363-63010364(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr17:63010447-63010448(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:63010501-63010502(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:63010513-63010514(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:63010588-63010589(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:63010631-63010632(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:63010636-63010637(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:63010688-63010689(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:63010699-63010700(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:63010905-63010906(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr17:63014373-63014374(-) m6A CDS       24284625//24209618//24981863//26404942//22608085
chr17:63014382-63014383(-) m6A CDS       24284625//24209618//24981863//26404942//22608085
chr17:63049665-63049666(-) m6A CDS       24209618
chr17:63052487-63052488(-) m6A CDS       27371828//27773536
chr17:63052584-63052585(-) m6A CDS       27371828//27773536//22575960
chr17:63052703-63052704(-) m6A CDS       24209618//27371828//27773536//22575960
chr17:63052842-63052843(-) Y 5'UTR       26075521
chr17:63052855-63052856(-) Y 5'UTR       26075521

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-223-5p
Exosome Primary dendritic cells     21505438
Exosome Breast milk     22211110
Exosome Plasma     23663360
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
GNA13
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-223-5p
Interactor2: GNA13

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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