Detail Information

Basic Information:


  VIRBase ID:  

HHID00065530

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-223-5p:           KAT6A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-223-5p KAT6A
miRBase
Accession/Entrez ID
MIMAT0004570 7994
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ARTHS//MOZ//MRD32//MYST-3//MYST3//RUNXBP2//ZC2HC6A//ZNF220

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-223-5p
rs1240009384 chrX:66018913    A/T
rs1397275461 chrX:66018904    G/T
rs1464475149 chrX:66018916    T/C
rs761701581 chrX:66018906    C/G
rs772305537 chrX:66018909    G/A
rs774279244 chrX:66018895    C/T
rs890919635 chrX:66018896    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR KAT6A
chr8:41879283(-) A-I      intronic
chr8:41879286(-) A-I      intronic
chr8:41879292(-) A-I      intronic
chr8:41817374(-) A-I      intronic
chr8:41817362(-) A-I      intronic
chr8:41817346(-) A-I      intronic
chr8:41817323(-) A-I      intronic
chr8:41817312(-) A-I      intronic
chr8:41803375(-) A-I      intronic
chr8:41803760(-) A-I      intronic
chr8:41803420(-) A-I      intronic
chr8:41890637(-) A-I      intronic
chr8:41802926(-) A-I      intronic
chr8:41802957(-) A-I      intronic
chr8:41802993(-) A-I      intronic
chr8:41803006(-) A-I      intronic
chr8:41803290(-) A-I      intronic
chr8:41802917(-) A-I      intronic
chr8:41803333(-) A-I      intronic
chr8:41803388(-) A-I      intronic
chr8:41803466(-) A-I      intronic
chr8:41823931(-) A-I      intronic
chr8:41803710(-) A-I      intronic
chr8:41803728(-) A-I      intronic
chr8:41803748(-) A-I      intronic
chr8:41803776(-) A-I      intronic
chr8:41803816(-) A-I      intronic
chr8:41803817(-) A-I      intronic
chr8:41816484(-) A-I      intronic
chr8:41817272(-) A-I      intronic
chr8:41817331(-) A-I      intronic
chr8:41819091(-) A-I      intronic
chr8:41879389(-) A-I      intronic
chr8:41889215(-) A-I      intronic
chr8:41889216(-) A-I      intronic
chr8:41889253(-) A-I      intronic
chr8:41889254(-) A-I      intronic
chr8:41890427(-) A-I      intronic
chr8:41890500(-) A-I      intronic
chr8:41890658(-) A-I      intronic
chr8:41890680(-) A-I      intronic
chr8:41897368(-) A-I      intronic
chr8:41897460(-) A-I      intronic
chr8:41898998(-) A-I      intronic
chr8:41899073(-) A-I      intronic
chr8:41899092(-) A-I      intronic
chr8:41899169(-) A-I      intronic
chr8:41899174(-) A-I      intronic
chr8:41901775(-) A-I      intronic
chr8:41901783(-) A-I      intronic
chr8:41901830(-) A-I      intronic
chr8:41901836(-) A-I      intronic
chr8:41901844(-) A-I      intronic
chr8:41902868(-) A-I      intronic
chr8:41902929(-) A-I      intronic
chr8:41902980(-) A-I      intronic
chr8:41903036(-) A-I      intronic
chr8:41903240(-) A-I      intronic
chr8:41903381(-) A-I      intronic
chr8:41903391(-) A-I      intronic
chr8:41903403(-) A-I      intronic
chr8:41903420(-) A-I      intronic
chr8:41903440(-) A-I      intronic
chr8:41903451(-) A-I      intronic
chr8:41903945(-) A-I      intronic
chr8:41903967(-) A-I      intronic
chr8:41903971(-) A-I      intronic
chr8:41903972(-) A-I      intronic
chr8:41903991(-) A-I      intronic
chr8:41904043(-) A-I      intronic
chr8:41905107(-) A-I      intronic
chr8:41905175(-) A-I      intronic
chr8:41905215(-) A-I      intronic
chr8:41819189(-) A-I      intronic
chr8:41830801(-) A-I      intronic
chr8:41830820(-) A-I      intronic
chr8:41830853(-) A-I      intronic
chr8:41830917(-) A-I      intronic
chr8:41830931(-) A-I      intronic
chr8:41830932(-) A-I      intronic
chr8:41830933(-) A-I      intronic
chr8:41830942(-) A-I      intronic
chr8:41890579(-) A-I      intronic
chr8:41890575(-) A-I      intronic
chr8:41890574(-) A-I      intronic
chr8:41889322(-) A-I      intronic
chr8:41889299(-) A-I      intronic
chr8:41889286(-) A-I      intronic
chr8:41830951(-) A-I      intronic
chr8:41831002(-) A-I      intronic
chr8:41843511(-) A-I      intronic
chr8:41843556(-) A-I      intronic
chr8:41843627(-) A-I      intronic
chr8:41843634(-) A-I      intronic
chr8:41843636(-) A-I      intronic
chr8:41843637(-) A-I      intronic
chr8:41843685(-) A-I      intronic
chr8:41843686(-) A-I      intronic
chr8:41843692(-) A-I      intronic
chr8:41843699(-) A-I      intronic
chr8:41865332(-) A-I      intronic
chr8:41889313(-) A-I      intronic
chr8:41865368(-) A-I      intronic
chr8:41865941(-) A-I      intronic
chr8:41865948(-) A-I      intronic
chr8:41865984(-) A-I      intronic
chr8:41865993(-) A-I      intronic
chr8:41866135(-) A-I      intronic
chr8:41867606(-) A-I      intronic
chr8:41867723(-) A-I      intronic
chr8:41867740(-) A-I      intronic
chr8:41865358(-) A-I      intronic
chr8:41897470(-) A-I      intronic
chr8:41866136(-) A-I      intronic
chr8:41902930(-) A-I      intronic
chr8:41803744(-) A-I      intronic
chr8:41899099(-) A-I      intronic
chr8:41890664(-) A-I      intronic
chr8:41902997(-) A-I      intronic
chr8:41819028(-) A-I      intronic
chr8:41817352(-) A-I      intronic
chr8:41797026(-) A-I      intronic
chr8:41899204(-) A-I      intronic
chr8:41803888(-) A-I      intronic
chr8:41879345(-) A-I      intronic
chr8:41819022(-) A-I      intronic
chr8:41890576(-) A-I      intronic
chr8:41867605(-) A-I      intronic
chr8:41817989(-) A-I      intronic
chr8:41803037(-) A-I      intronic
chr8:41889342(-) A-I      intronic
chr8:41803764(-) A-I      intronic
chr8:41830872(-) A-I      intronic
chr8:41817898(-) A-I      intronic
chr8:41901886(-) A-I      intronic
chr8:41881198(-) A-I      intronic
chr8:41819099(-) A-I      intronic
chr8:41819188(-) A-I      intronic
chr8:41830965(-) A-I      intronic
chr8:41898546(-) A-I      intronic
chr8:41817232(-) A-I      intronic
chr8:41897281(-) A-I      intronic
chr8:41902913(-) A-I      intronic
chr8:41817468(-) A-I      intronic
chr8:41890663(-) A-I      intronic
chr8:41889475(-) A-I      intronic
chr8:41903239(-) A-I      intronic
chr8:41816488(-) A-I      intronic
chr8:41890620(-) A-I      intronic
chr8:41831010(-) A-I      intronic
chr8:41867244(-) A-I      intronic
chr8:41844312(-) A-I      intronic
chr8:41901789(-) A-I      intronic
chr8:41803485(-) A-I      intronic
chr8:41899090(-) A-I      intronic
chr8:41881278(-) A-I      intronic
chr8:41866031(-) A-I      intronic
chr8:41899853(-) A-I      intronic
chr8:41898171(-) A-I      intronic
chr8:41831810(-) A-I      intronic
chr8:41903004(-) A-I      intronic
chr8:41898131(-) A-I      intronic
chr8:41902887(-) A-I      intronic
chr8:41803840(-) A-I      intronic
chr8:41803365(-) A-I      intronic
chr8:41853317(-) A-I      intronic
chr8:41899093(-) A-I      intronic
chr8:41898545(-) A-I      intronic
chr8:41905029(-) A-I      intronic
chr8:41899004(-) A-I      intronic
chr8:41897416(-) A-I      intronic
chr8:41899043(-) A-I      intronic
chr8:41803797(-) A-I      intronic
chr8:41842352(-) A-I      intronic
chr8:41881256(-) A-I      intronic
chr8:41902834(-) A-I      intronic
chr8:41901711(-) A-I      intronic
chr8:41879363(-) A-I      intronic
chr8:41899050(-) A-I      intronic
chr8:41902958(-) A-I      intronic
chr8:41859922(-) A-I      intronic
chr8:41901900(-) A-I      intronic
chr8:41831734(-) A-I      intronic
chr8:41803837(-) A-I      intronic
chr8:41859930(-) A-I      intronic
chr8:41890561(-) A-I      intronic
chr8:41844447(-) A-I      intronic
chr8:41817923(-) A-I      intronic
chr8:41898637(-) A-I      intronic
chr8:41901805(-) A-I      intronic
chr8:41853290(-) A-I      intronic
chr8:41831684(-) A-I      intronic
chr8:41803829(-) A-I      intronic
chr8:41803824(-) A-I      intronic
chr8:41867245(-) A-I      intronic
chr8:41803740(-) A-I      intronic
chr8:41901799(-) A-I      intronic
chr8:41897511(-) A-I      intronic
chr8:41797042(-) A-I      intronic
chr8:41890465(-) A-I      intronic
chr8:41867631(-) A-I      intronic
chr8:41902972(-) A-I      intronic
chr8:41803784(-) A-I      intronic
chr8:41866084(-) A-I      intronic
chr8:41879364(-) A-I      intronic
chr8:41817968(-) A-I      intronic
chr8:41897390(-) A-I      intronic
chr8:41844353(-) A-I      intronic
chr8:41902916(-) A-I      intronic
chr8:41797027(-) A-I      intronic
chr8:41879346(-) A-I      intronic
chr8:41899223(-) A-I      intronic
chr8:41889264(-) A-I      intronic
chr8:41901792(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED KAT6A
chr8:41823975(-) A-I intron -    21960545
chr8:41822458(-) A-G intron -    22484847
chr8:41822501(-) A-G intron -    22484847
chr8:41823811(-) A-G intron -    22484847
chr8:41823814(-) A-G intron -    22484847
chr8:41823921(-) A-G intron -    22484847
chr8:41823923(-) A-G intron -    22484847
chr8:41803037(-) A-G intron -    22484847
chr8:41803357(-) A-G intron -    22484847
chr8:41803436(-) A-G intron -    22484847
chr8:41803485(-) A-G intron -    22484847
chr8:41803829(-) A-G intron -    22484847
chr8:41817478(-) C-T intron -    22484847
chr8:41817898(-) A-G intron -    22484847
chr8:41819022(-) A-G intron -    22484847
chr8:41819028(-) A-G intron -    22484847
chr8:41843531(-) A-G intron -    22484847
chr8:41844447(-) A-G intron -    22484847
chr8:41866136(-) A-G intron -    22484847
chr8:41879345(-) A-G intron -    22484847
chr8:41879363(-) A-G intron -    22484847
chr8:41879364(-) A-G intron -    22484847
chr8:41881198(-) A-G intron -    22484847
chr8:41881256(-) A-G intron -    22484847
chr8:41881278(-) A-G intron -    22484847
chr8:41897390(-) A-G intron -    22484847
chr8:41897470(-) A-G intron -    22484847
chr8:41897511(-) A-G intron -    22484847
chr8:41898086(-) A-G intron -    22484847
chr8:41898125(-) A-G intron -    22484847
chr8:41898131(-) A-G intron -    22484847
chr8:41899050(-) A-G intron -    22484847
chr8:41899087(-) A-G intron -    22484847
chr8:41899090(-) A-G intron -    22484847
chr8:41899180(-) A-G intron -    22484847
chr8:41899204(-) A-G intron -    22484847
chr8:41901711(-) A-G intron -    22484847
chr8:41901789(-) A-G intron -    22484847
chr8:41901886(-) A-G intron -    22484847
chr8:41901900(-) A-G intron -    22484847
chr8:41902913(-) A-G intron -    22484847
chr8:41902916(-) A-G intron -    22484847
chr8:41903333(-) A-T intron -    22484847
chr8:41903335(-) G-T intron -    22484847
chr8:41905089(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase KAT6A
chr8:41788381-41788382(-) m6A 3'UTR       -
chr8:41788416-41788417(-) m6A 3'UTR       -
chr8:41788955-41788956(-) m6A 3'UTR       27773535
chr8:41789042-41789043(-) m6A 3'UTR       27773535
chr8:41789074-41789075(-) m6A 3'UTR       27773535
chr8:41789183-41789184(-) m6A 3'UTR       27773535
chr8:41789201-41789202(-) m6A 3'UTR       27773535
chr8:41789210-41789211(-) m6A 3'UTR       27773535
chr8:41789222-41789223(-) m6A 3'UTR       27773535
chr8:41789272-41789273(-) m6A 3'UTR       27773535
chr8:41789286-41789287(-) m6A 3'UTR       27773535
chr8:41789402-41789403(-) m6A 3'UTR       24981863//27773535//22608085
chr8:41789461-41789462(-) m6A 3'UTR       24981863//27773535//22608085
chr8:41789493-41789494(-) m6A 3'UTR       24981863//27773535//22608085
chr8:41789508-41789509(-) m6A 3'UTR       24981863//27773535//22608085
chr8:41789571-41789572(-) m6A 3'UTR       24981863//27773535//22608085
chr8:41789642-41789643(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:41789657-41789658(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:41789674-41789675(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr8:41789698-41789699(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr8:41789712-41789713(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr8:41789740-41789741(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:41789813-41789814(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:41789901-41789902(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:41789906-41789907(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:41789939-41789940(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:41789969-41789970(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:41789987-41789988(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:41790044-41790045(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:41790272-41790273(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr8:41790293-41790294(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr8:41790330-41790331(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr8:41790367-41790368(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr8:41790443-41790444(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:41790554-41790555(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr8:41790998-41790999(-) m6A CDS       24284625//24981863//27773535//22608085
chr8:41791043-41791044(-) m6A CDS       24284625//24981863//27773535//22608085
chr8:41791052-41791053(-) m6A CDS       24284625//24981863//27773535//22608085
chr8:41791097-41791098(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr8:41791118-41791119(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr8:41791152-41791153(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr8:41791160-41791161(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr8:41791192-41791193(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr8:41791303-41791304(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr8:41791319-41791320(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr8:41791343-41791344(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr8:41791374-41791375(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr8:41791392-41791393(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr8:41791403-41791404(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr8:41791467-41791468(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr8:41791541-41791542(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr8:41791632-41791633(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr8:41791735-41791736(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr8:41791815-41791816(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr8:41791916-41791917(-) m1A CDS       26863196
chr8:41791944-41791945(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:41791950-41791951(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:41791970-41791971(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:41792090-41792091(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr8:41792109-41792110(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr8:41792134-41792135(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22608085
chr8:41792227-41792228(-) m6A CDS       24284625//24981863//27773535//27371828
chr8:41792239-41792240(-) m6A CDS       27773535
chr8:41792260-41792261(-) m6A CDS       27773535
chr8:41794891-41794892(-) m6A CDS       24981863//27773535//27371828//22608085
chr8:41794939-41794940(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr8:41794984-41794985(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr8:41795004-41795005(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr8:41795016-41795017(-) m6A CDS       24284625//27773535//27371828//27773536//22608085
chr8:41795044-41795045(-) m6A CDS       24284625//27773535//27371828//27773536
chr8:41795083-41795084(-) m6A CDS       24284625//24981863//27773535//27371828//27773536
chr8:41798551-41798552(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:41798581-41798582(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr8:41798602-41798603(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr8:41798644-41798645(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr8:41798665-41798666(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr8:41798707-41798708(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr8:41798743-41798744(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr8:41798775-41798776(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr8:41798783-41798784(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr8:41798854-41798855(-) m6A CDS       24284625//24209618//24981863//27773535//27371828
chr8:41798896-41798897(-) m6A CDS       24284625//24209618//24981863//27773535//27371828
chr8:41798929-41798930(-) m6A CDS       27371828
chr8:41798936-41798937(-) m6A CDS       27371828
chr8:41799580-41799581(-) m6A 3'UTR//intron       24981863
chr8:41820099-41820100(-) m6A intron       27773535
chr8:41832233-41832234(-) m6A CDS//exon       27371828
chr8:41832314-41832315(-) m6A CDS//exon       24981863//27773535//27371828
chr8:41834593-41834594(-) m6A CDS//exon       24981863//27773535//27371828
chr8:41834816-41834817(-) m6A CDS//exon       24981863//27773535
chr8:41834897-41834898(-) m6A exon//intron       24981863
chr8:41836165-41836166(-) m6A CDS       27773535
chr8:41836170-41836171(-) m6A CDS       27773535
chr8:41836183-41836184(-) m6A CDS       27773535
chr8:41836248-41836249(-) m6A CDS       27773535
chr8:41845069-41845070(-) m6A CDS       24284625//22608085
chr8:41906003-41906004(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr8:41906018-41906019(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr8:41906192-41906193(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr8:41906213-41906214(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr8:41906235-41906236(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr8:41906294-41906295(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr8:41906320-41906321(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr8:41906348-41906349(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr8:41906359-41906360(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr8:41906423-41906424(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr8:41906478-41906479(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr8:41906486-41906487(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr8:41906552-41906553(-) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr8:41906613-41906614(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr8:41906627-41906628(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr8:41906702-41906703(-) m6A 5'UTR       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr8:41906746-41906747(-) m6A 5'UTR       24284625//24209618//24981863//27773535//22608085
chr8:41907140-41907141(-) m6A 5'UTR//intron       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-223-5p
Exosome Primary dendritic cells     21505438
Exosome Breast milk     22211110
Exosome Plasma     23663360
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
KAT6A
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)|K562 cells     -
Membrane K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-223-5p
Interactor2: KAT6A

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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