Detail Information

Basic Information:


  VIRBase ID:  

HHID00060912

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-582-5p:           LAT2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-582-5p LAT2
miRBase
Accession/Entrez ID		 MIMAT0003247 7462
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - HSPC046//LAB//NTAL//WBSCR15//WBSCR5//WSCR5

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-582-5p
rs1190339760 chr5:59703674    G/A
rs1291143355 chr5:59703672    T/A
rs1455812678 chr5:59703667    G/GT
rs753758364 chr5:59703675    T/C
rs779684016 chr5:59703670    A/C
rs779684016 chr5:59703670    A/G
rs1245677877 chr5:59703684    T/A
rs373502275 chr5:59703686    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LAT2
chr7:73637742(+) A-I      intronic
chr7:73637669(+) A-I      intronic
chr7:73637620(+) A-I      intronic
chr7:73637606(+) A-I      intronic
chr7:73637566(+) A-I      intronic
chr7:73637107(+) A-I      intronic
chr7:73637038(+) A-I      intronic
chr7:73636965(+) A-I      intronic
chr7:73633302(+) A-I      intronic
chr7:73633289(+) A-I      intronic
chr7:73631663(+) A-I      intronic
chr7:73631533(+) A-I      intronic
chr7:73631529(+) A-I      intronic
chr7:73631507(+) A-I      intronic
chr7:73631500(+) A-I      intronic
chr7:73642251(+) A-I      intronic
chr7:73626510(+) A-I      intronic
chr7:73626509(+) A-I      intronic
chr7:73642277(+) A-I      intronic
chr7:73641436(+) A-I      intronic
chr7:73640861(+) A-I      intronic
chr7:73637779(+) A-I      intronic
chr7:73631506(+) A-I      intronic
chr7:73631605(+) A-I      intronic
chr7:73637179(+) A-I      intronic
chr7:73625045(+) A-I      intronic
chr7:73625022(+) A-I      intronic
chr7:73642092(+) A-I      intronic
chr7:73631602(+) A-I      intronic
chr7:73631610(+) A-I      intronic
chr7:73637673(+) A-I      intronic
chr7:73642076(+) A-I      intronic
chr7:73642066(+) A-I      intronic
chr7:73642060(+) A-I      intronic
chr7:73641797(+) A-I      intronic
chr7:73641691(+) A-I      intronic
chr7:73641529(+) A-I      intronic
chr7:73642350(+) A-I      intronic
chr7:73626556(+) A-I      intronic
chr7:73641501(+) A-I      intronic
chr7:73641472(+) A-I      intronic
chr7:73642427(+) A-I      intronic
chr7:73642386(+) A-I      intronic
chr7:73642344(+) A-I      intronic
chr7:73629202(+) A-I      5'UTR
chr7:73640744(+) A-I      3'UTR
chr7:73639603(+) A-I      3'UTR
chr7:73640493(+) A-I      3'UTR
chr7:73640607(+) A-I      3'UTR
chr7:73629201(+) A-I      5'UTR
chr7:73633256(+) A-I      intronic
chr7:73642359(+) A-I      intronic
chr7:73635586(+) A-I      intronic
chr7:73631601(+) A-I      intronic
chr7:73636944(+) A-I      intronic
chr7:73633085(+) A-I      intronic
chr7:73642434(+) A-I      intronic
chr7:73642421(+) A-I      intronic
chr7:73631686(+) A-I      intronic
chr7:73637004(+) A-I      intronic
chr7:73636496(+) A-I      intronic
chr7:73625096(+) A-I      intronic
chr7:73642291(+) A-I      intronic
chr7:73636924(+) A-I      intronic
chr7:73636676(+) A-I      intronic
chr7:73642082(+) A-I      intronic
chr7:73640877(+) A-I      intronic
chr7:73642038(+) A-I      intronic
chr7:73639645(+) A-I      3'UTR
chr7:73640712(+) A-I      3'UTR
chr7:73640722(+) A-I      3'UTR
chr7:73640568(+) A-I      3'UTR
chr7:73639639(+) A-I      3'UTR
chr7:73640679(+) A-I      3'UTR
chr7:73640368(+) A-I      3'UTR
chr7:73640717(+) A-I      3'UTR
chr7:73640507(+) A-I      3'UTR
chr7:73639613(+) A-I      3'UTR
chr7:73641489(+) A-I      intronic
chr7:73641715(+) A-I      intronic
chr7:73642998(+) A-I      intronic
chr7:73637699(+) A-I      intronic
chr7:73641476(+) A-I      intronic
chr7:73637167(+) A-I      intronic
chr7:73641435(+) A-I      intronic
chr7:73631676(+) A-I      intronic
chr7:73642104(+) A-I      intronic
chr7:73631600(+) A-I      intronic
chr7:73640841(+) A-I      intronic
chr7:73641802(+) A-I      intronic
chr7:73641750(+) A-I      intronic
chr7:73637760(+) A-I      intronic
chr7:73640927(+) A-I      intronic
chr7:73637033(+) A-I      intronic
chr7:73637003(+) A-I      intronic
chr7:73637713(+) A-I      intronic
chr7:73641689(+) A-I      intronic
chr7:73636960(+) A-I      intronic
chr7:73637043(+) A-I      intronic
chr7:73642385(+) A-I      intronic
chr7:73637749(+) A-I      intronic
chr7:73641824(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LAT2
chr7:73637760(+) A-I intron -    22327324
chr7:73640717(+) A-I intron -    22327324
chr7:73640722(+) A-I intron -    22327324
chr7:73642038(+) A-I intron -    22327324
chr7:73642082(+) A-I intron -    22327324
chr7:73640568(+) A-G intron -    21725310
chr7:73640717(+) A-G intron -    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LAT2
chr7:73624403-73624404(+) m6A 5'UTR//exon       24209618
chr7:73624410-73624411(+) m6A 5'UTR//exon       24209618
chr7:73638386-73638387(+) m6A 3'UTR//CDS//exon       25456834
chr7:73638412-73638413(+) m6A 3'UTR//CDS//exon       25456834
chr7:73638482-73638483(+) m6A 3'UTR//CDS//exon       25456834
chr7:73639029-73639030(+) m6A 3'UTR//CDS//exon       24209618
chr7:73639077-73639078(+) m6A 3'UTR//exon       24209618
chr7:73640810-73640811(+) m6A 3'UTR//intron       24209618
chr7:73643291-73643292(+) m6A 3'UTR//exon       24209618
chr7:73643307-73643308(+) m6A 3'UTR//exon       24209618
chr7:73643328-73643329(+) m6A 3'UTR//exon       24209618
chr7:73643387-73643388(+) m6A 3'UTR//exon       24209618
chr7:73643403-73643404(+) m6A 3'UTR       24209618
chr7:73643437-73643438(+) m6A 3'UTR       24209618//24981863
chr7:73643589-73643590(+) m6A 3'UTR       -
chr7:73643835-73643836(+) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-582-5p
Cytoplasm Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Exosome Plasma     23663360
Exosome Serum     25349172
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
LAT2
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function
ncDR hsa-miR-582-5p
Iodine Green 9956454 Drug sensitive
Indolo[2,1-b]quinazoline-6,12-dione 73549 Drug sensitive
Secalonic acid D 73431 Drug sensitive
1,1'-Diethyl-2,2'-cyanine chloride 5717105 Drug sensitive
6-(4-Ethylphenyl)-2-benzenesulfonamidepyridazine-3(2H)-one 54612980 Drug sensitive
Herveline O 5459269 Drug sensitive
Cuspidatin C 5459164 Drug sensitive
Staurosporine, 98% 49831000 Drug resistant
Methyl (13S,15S,16R,18S)-13-[(10S,11R,12R,19R)-11-acetyloxy-12-ethyl-10-hydroxy-5-methoxy-10-methoxycarbonyl-8-methyl-8,16-diazapentacyclo[10.6.1.01,9.02,7.016,19]nonadeca-2,4,6,13-tetraen-4-yl]-18-ethyl-1-oxido-17-oxa-11-aza-1-azoniapentacyclo[13.4.1.04,12.05,10.016,18]icosa-4(12),5,7,9-tetraene-13-carboxylate 462173 Drug sensitive
o6-Benzylguanine 4578 Drug resistant
Triciribine phosphate 43860 Drug resistant
Aminopyrimidine-CH3 406278 Drug sensitive
Aminopyrimidine-F 406276 Drug sensitive
Acetic acid,4,7,10-tetraazacyclododecane-1,7-diyl]bis 387352 Drug sensitive
Hookerianamide J 25016666 Drug sensitive
Antimycin A3 245869 Drug sensitive
Kinetin riboside 20345 Drug resistant
4-[[(1-Benzylpyrazolo[3,4-d]pyrimidin-4-yl)hydrazinylidene]methyl]-2-methoxyphenol 136091540 Drug resistant
Astrazon Orange R 135747272 Drug sensitive
1-[(2-cyclohexymethoxy)methyl]-5-ethyl-6-iodouracil - Drug resistant
tunicamycin - Drug resistant
(z) 4-acetoxy-(3,4',5)-trimethoxystilbene - Drug sensitive
2k2S,S? - Drug sensitive
4-[4-(3-Methoxy-phenyl)-piperazin-1 -yl]-5H-pyrrolo[3,2-d]pyrimidine - Drug sensitive
phosphonium, triphenylpropenyl-, bromide, (e)- (8ci) - Drug sensitive
(Z)-6-chloro-3-((2-(4-methoxyphenyl)-3H-benzo[d]imidazol-5-yl)methylene)indolin-2-one - Drug sensitive
dichlorobisoxinatotitanium(iv) - Drug sensitive
Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-582-5p
Formaldehyde 712 Drug interaction    RC00006017
Alocrest 60780 Drug interaction    RC00006022
Vincristine 5978 Drug interaction    RC00006020
Sunitinib 5329102 Drug interaction    RC00006023
Doxorubicin 31703 Drug interaction    RC00006021
cis-Diaminedichloroplatinum 2767 Drug interaction    RC00006019
Verapamil 2520 Drug interaction    RC00006018
Navitoclax 24978538 Drug interaction    RC00006024
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-582-5p
Cisplatin 5702198       21575166
Sirolimus 5284616       30666128
Methyl (9R,10S,11S,12R,19R)-11-acetyloxy-12-ethyl-4-[(13S,15R,17S)-17-ethyl-17-hydroxy-13-methoxycarbonyl-1,11-diazatetracyclo[13.3.1.04,12.05,10]nonadeca-4(12),5,7,9-tetraen-13-yl]-8-formyl-10-hydroxy-5-methoxy-8,16-diazapentacyclo[10.6.1.01,9.02,7.016,19]nonadeca-2,4,6,13-tetraene-10-carboxylate 134755071       26617885
Resource Symbol Drug Name PubChem ID
RNAactDrug hsa-miR-582-5p
N-[(2R)-2,3-Dihydroxypropoxy]-3,4-difluoro-2-[(2-fluoro-4-iodophenyl)amino]benzamide       9826528
l-685,458       5479543
Selumetinib       10127622

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-582-5p
Interactor2: LAT2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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