Detail Information

Basic Information:


  VIRBase ID:  

HHID00056479

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-361-5p:           ENDOD1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-361-5p ENDOD1
miRBase
Accession/Entrez ID		 MIMAT0000703 23052
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-361-5p
rs1201941835 chrX:85903694    T/C
rs1341659793 chrX:85903684    C/A
rs1430235395 chrX:85903683    A/AC

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ENDOD1
chr11:94859919(+) A-I      intronic
chr11:94859984(+) A-I      intronic
chr11:94859906(+) A-I      intronic
chr11:94856089(+) A-I      intronic
chr11:94859908(+) A-I      intronic
chr11:94855443(+) A-I      intronic
chr11:94847423(+) A-I      intronic
chr11:94855440(+) A-I      intronic
chr11:94840461(+) A-I      intronic
chr11:94855426(+) A-I      intronic
chr11:94855410(+) A-I      intronic
chr11:94860036(+) A-I      intronic
chr11:94833934(+) A-I      intronic
chr11:94833881(+) A-I      intronic
chr11:94840418(+) A-I      intronic
chr11:94833779(+) A-I      intronic
chr11:94840387(+) A-I      intronic
chr11:94847367(+) A-I      intronic
chr11:94841048(+) A-I      intronic
chr11:94833753(+) A-I      intronic
chr11:94833896(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ENDOD1
chr11:94861604-94861605(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr11:94861665-94861666(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr11:94861787-94861788(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr11:94861823-94861824(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr11:94861856-94861857(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr11:94861871-94861872(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr11:94861964-94861965(+) m6A CDS       24209618//25456834//24981863//22608085
chr11:94862007-94862008(+) m6A CDS       24209618//24981863//22608085
chr11:94862039-94862040(+) m6A CDS       24209618//24981863//22608085
chr11:94862053-94862054(+) m6A CDS       24209618//24981863//22608085
chr11:94862063-94862064(+) m6A CDS       24209618//24981863//22608085
chr11:94862229-94862230(+) m6A CDS       24981863//22608085
chr11:94862306-94862307(+) m6A CDS       24981863//22608085
chr11:94862600-94862601(+) m6A CDS       24209618//25456834//24981863//22575960//22608085
chr11:94862743-94862744(+) m6A 3'UTR       24209618//24981863//22608085
chr11:94862752-94862753(+) m6A 3'UTR       24209618//24981863//22608085
chr11:94864099-94864100(+) m6A 3'UTR       24981863
chr11:94864190-94864191(+) m6A 3'UTR       24981863
chr11:94864230-94864231(+) m6A 3'UTR       24981863
chr11:94865070-94865071(+) m6A 3'UTR       24981863
chr11:94865110-94865111(+) m6A 3'UTR       24981863//22608085
chr11:94865158-94865159(+) m6A 3'UTR       25456834//24981863//22608085
chr11:94865197-94865198(+) m6A 3'UTR       25456834//24981863//22608085
chr11:94865257-94865258(+) m6A 3'UTR       25456834//24981863//22608085
chr11:94865374-94865375(+) m6A 3'UTR       24981863//22608085
chr11:94865447-94865448(+) m6A 3'UTR       24209618//24981863//22608085
chr11:94865468-94865469(+) m6A 3'UTR       24209618//24981863//22608085
chr11:94865478-94865479(+) m6A 3'UTR       24209618//24981863//22608085
chr11:94865517-94865518(+) m6A 3'UTR       24209618//24981863//26404942//22608085
chr11:94865529-94865530(+) m6A 3'UTR       24209618//24981863//26404942//22608085
chr11:94865550-94865551(+) m6A 3'UTR       24209618//24981863//22608085
chr11:94865584-94865585(+) m6A 3'UTR       24209618//24981863//22575960//22608085
chr11:94865598-94865599(+) m6A 3'UTR       24209618//24981863//22575960//22608085
chr11:94865627-94865628(+) m6A 3'UTR       24209618//25456834//24981863//27773535//22575960//22608085
chr11:94865672-94865673(+) m6A 3'UTR       24209618//24981863//22608085
chr11:94865686-94865687(+) m6A 3'UTR       24209618//24981863//22608085
chr11:94865694-94865695(+) m6A 3'UTR       24209618//24981863//22608085
chr11:94865735-94865736(+) m6A 3'UTR       24209618//24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-361-5p
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Neural progenitor cells     21363885
Cytoplasm Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Exosome Serum     18589210
Exosome Breast cancer cell line (MCF-7)     20976003
Exosome Primary dendritic cells|T cell line (J77)     21505438
Exosome Renal cancer cells     21670082
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Human mast cell line (HMC-1)     24009880
Exosome Serum     25349172
Exosome Blood|Kidney tissue     -
Extracellular vesicle HEK-293T cells     22849433
Microvesicle Seminal plasma     23539611
Microvesicle Blood|Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Nucleus Nasopharyngeal carcinoma cells     20498841
ENDOD1
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function
ncDR hsa-miR-361-5p
7-Epi-10-deacetylbaccatin III 9872117 Drug sensitive
Pharmakon1600-01503602 60148415 Drug sensitive
Ayanin 5280682 Drug resistant
Rogiolol 402519 Drug sensitive
2-Acetyl-1,2-dihydroellipticine 376328 Drug resistant
Jasplakinolide epoxide C 372550 Drug sensitive
Antineoplastic-642316 369949 Drug sensitive
Gold;(2S,3R,4S,5R,6R)-3,4,5-triacetyloxy-6-(acetyloxymethyl)oxane-2-thiolate;triethylphosphanium 138402869 Drug sensitive
Dibutyltin dichloride 12688 Drug sensitive
Capri Blue 102162 Drug sensitive
6-aryl alkyl fluoro quinolone derivative - Drug resistant
antineoplastic-d655481 - Drug resistant
2-[(3,4-dicloro)anilino]-3-phenyl-5,7-diamino quinoxaline - Drug sensitive
4-[3-(3,4-dihydro-1H-isoquinolin-2-yl)prop-1-en-2-yl]-N-pyrazin-2-ylbenzamide - Drug sensitive
Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-361-5p
Formaldehyde 712 Drug interaction    RC00004017
Gemcitabine 60750 Drug interaction    RC00004022
Eloxatine 5310940 Drug interaction    RC00004027
Diethylstilbestrol 448537 Drug interaction    RC00004025
Paclitaxel 36314 Drug interaction    RC00004021
5-Fluorouracil 3385 Drug interaction    RC00004019
Doxorubicin 31703 Drug interaction    RC00004020
Tamoxifen 2733526 Drug interaction    RC00004026
Verapamil 2520 Drug interaction    RC00004018
N-(3-(5-Chloro-1H-pyrrolo[2,3-b]pyridine-3-carbonyl)-2,4-difluorophenyl)propane-1-sulfonamide 24180719 Drug interaction    RC00004028
Docetaxel 148124 Drug interaction    RC00004024
Methotrexate 126941 Drug interaction    RC00004023
Glucocorticoid - Drug interaction    RC00004031
platinum-based doublet chemotherapy - Drug interaction    RC00004029
1,2,6-Tri-O-galloyl-beta-D-glucopyranose - Drug interaction    RC00004030
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-361-5p
N-(3-(5-Chloro-1H-pyrrolo[2,3-b]pyridine-3-carbonyl)-2,4-difluorophenyl)propane-1-sulfonamide 24180719       26456124
Resource Symbol Drug Name PubChem ID
RNAactDrug hsa-miR-361-5p
Topotecan       60700
Palbociclib       5330286

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-361-5p
Interactor2: ENDOD1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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