Basic Information:
VIRBase ID: HHID00039141
Virus: Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)
Host: Homo sapiens
Confidence Score: 0.4752
Interaction Type: Host-Host interaction
Predicted Binding:
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Interactor Information:
Interactor1
Interactor2
Symbol
hsa-let-7a-5p
TMED4
miRBase Accession/Entrez ID
MIMAT0000062
222068
Organism
Homo sapiens
Homo sapiens
Category
miRNA
mRNA
Alias
-
ERS25//GMP25iso//HNLF//p24a3//p24alpha3
ncRNA SNP information:
Resource
Symbol
SNP ID
SNP Position
Ref/Alt
miRNASNP-v3
hsa-let-7a-5p
RNA Editing:
Resource
Symbol
Editing Position
Change
Genetic Region
RADAR
TMED4
Resource
Symbol
Editing Position
Change
SeqReg
exReg
PMID
DARNED
TMED4
RNA Modification:
Resource
Symbol
ModificationPosition
Type
Genomic Context
PMID
RMBase
TMED4
RNA Localization:
Resource
Symbol
Subcellular Localization
Tissue or Cell Line
PMID
RNALocate
hsa-let-7a-5p
TMED4
Related Drug Information:
Resource
Symbol
Drug Name
PubChem ID
Function
ncDR
hsa-let-7a-5p
Resource
Symbol
Drug Name
PubChem ID
Function
Link
RNAInter
hsa-let-7a-5p
Resource
Symbol
Drug Name
PubChem ID
PMID
NoncoRNA
hsa-let-7a-5p
Interaction Network (The top 100 interactions) :
Interactor1: hsa-let-7a-5p
Interactor2: TMED4
Evidence Support:
Weak-Evidence
PAR-CLIP
Support Database
ViRBase
References:
PMID
22291592
Target region
3'UTR
Source
ViRBase
Interactor1 expression
None
Tissue or cell line
EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells
Interactor2 expression
None
Description
We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.