Basic Information:

  VIRBase ID:  

HHID00020683

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-27a-3p:  MIMAT0000537          Gbp7:  NM_145545     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-27a-3p	Gbp7
miRBase Accession/Entrez ID	MIMAT0000537	229900
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	9830147J24Rik

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Gbp7	chr3:142534581-142534582(+) m6A CDS       25683224//24981863 chr3:142534592-142534593(+) m6A CDS       25683224//24981863 chr3:142534607-142534608(+) m6A CDS       25683224//24981863 chr3:142541536-142541537(+) Y CDS//exon       26075521 chr3:142543121-142543122(+) m6A CDS       25412662 chr3:142545498-142545499(+) m6A CDS       25412662//24981863 chr3:142545516-142545517(+) m6A CDS       25412662//24981863 chr3:142545910-142545911(+) m6A CDS       25412662//24981863 chr3:142545916-142545917(+) m6A CDS       25412662//24981863 chr3:142545998-142545999(+) m6A CDS       25683224//25412662//24981863//22608085 chr3:142546011-142546012(+) m6A CDS       25683224//25412662//24981863//22608085 chr3:142546042-142546043(+) m6A CDS       25683224//25412662//24981863//22608085 chr3:142546329-142546330(+) m6A CDS       25683224//25412662//24981863//22608085 chr3:142546541-142546542(+) m6A CDS       24981863//22608085 chr3:142546554-142546555(+) m6A CDS       24981863//22608085 chr3:142546567-142546568(+) m6A CDS       24981863//22608085 chr3:142546600-142546601(+) m6A 3'UTR       24981863//22608085 chr3:142546651-142546652(+) m6A 3'UTR       24981863//22608085 chr3:142546690-142546691(+) m6A 3'UTR       25683224//24981863//22608085 chr3:142546705-142546706(+) m6A 3'UTR       25683224//24981863//22608085 chr3:142546737-142546738(+) m6A 3'UTR       25683224//24981863//22608085 chr3:142546777-142546778(+) m6A 3'UTR       25683224//24981863//25569111//22608085 chr3:142546822-142546823(+) m6A 3'UTR       25683224//24981863//25569111//22608085 chr3:142546905-142546906(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr3:142546963-142546964(+) m6A 3'UTR       25683224//25456834//24981863//22608085 chr3:142546994-142546995(+) m6A 3'UTR       25456834//24981863//22608085 chr3:142547017-142547018(+) m6A 3'UTR       24981863//22608085 chr3:142547029-142547030(+) m6A 3'UTR       24981863//22608085 chr3:142547160-142547161(+) m6A 3'UTR       25683224//24981863 chr3:142547186-142547187(+) m6A 3'UTR       25683224//24981863//25569111 chr3:142547219-142547220(+) m6A 3'UTR       25683224//24981863//25569111 chr3:142547251-142547252(+) m6A 3'UTR       25683224//24981863//25569111 chr3:142547274-142547275(+) m6A 3'UTR       25683224//24981863//25569111 chr3:142547291-142547292(+) m6A 3'UTR       25683224//24981863//25569111 chr3:142547299-142547300(+) m6A 3'UTR       25683224//24981863//25569111 chr3:142547318-142547319(+) m6A 3'UTR       25683224//24981863//25569111 chr3:142547337-142547338(+) m6A 3'UTR       25683224//24981863//25569111 chr3:142547487-142547488(+) m6A 3'UTR       24981863 chr3:142547500-142547501(+) m6A 3'UTR       24981863 chr3:142547506-142547507(+) m6A 3'UTR       24981863 chr3:142547512-142547513(+) m6A 3'UTR       24981863 chr3:142547535-142547536(+) m6A 3'UTR       24981863 chr3:142547573-142547574(+) m6A 3'UTR       24981863 chr3:142547598-142547599(+) m6A 3'UTR       25683224//24981863 chr3:142547608-142547609(+) m6A 3'UTR       25683224//24981863 chr3:142547618-142547619(+) m6A 3'UTR       25683224//24981863 chr3:142547623-142547624(+) m6A 3'UTR       25683224//24981863 chr3:142547667-142547668(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22575960 chr3:142547692-142547693(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr3:142547702-142547703(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr3:142547773-142547774(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr3:142547909-142547910(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:142547917-142547918(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:142547962-142547963(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:142548055-142548056(+) m6A 3'UTR       25683224//24981863//25569111//22608085//22575960 chr3:142548094-142548095(+) m6A 3'UTR       25683224//24981863//25569111//22608085 chr3:142548232-142548233(+) m6A 3'UTR       25683224//24981863//25569111//22608085 chr3:142548243-142548244(+) m6A 3'UTR       25683224//24981863//22608085 chr3:142548251-142548252(+) m6A 3'UTR       25683224//24981863//22608085 chr3:142548402-142548403(+) m6A 3'UTR       24981863 chr3:142548501-142548502(+) m6A 3'UTR       24981863 chr3:142548585-142548586(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-27a-3p	Exosome Mouse metastatic mammary carcinoma cells (4T1)|Non-tumorigenic mouse mammary epithelial cells (NMuMG)     25446899 Exosome Serum     28160157 Exosome B6 BMDCs     22031862 Exosome Mouse hypothalamic neuronal cell line (GT1-7)     22965126 Exosome Bone marrow-derived macrophages     25159140 Mitochondrion Heart tissue (subsarcolemmal and interfibrillar)     26377859 Nucleus Liver cells     21862971

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-27a-3p
Interactor2: Gbp7

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).