Basic Information:

  VIRBase ID:  

HHID00020667

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-27a-3p:  MIMAT0000537          Jak2:  NM_001048177     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-27a-3p	Jak2
miRBase Accession/Entrez ID	MIMAT0000537	16452
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	Fd17

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Jak2	chr19:29252036-29252037(+) m6A 5'UTR       25412662//25569111 chr19:29275041-29275042(+) m6A CDS       25683224//22608085 chr19:29276800-29276801(+) m6A CDS       25683224//22608085 chr19:29276834-29276835(+) m6A CDS       25683224//22608085 chr19:29276861-29276862(+) m6A CDS       25683224//22608085 chr19:29276866-29276867(+) m6A CDS       25683224//22608085 chr19:29282447-29282448(+) m6A CDS       25683224//25412662//22608085 chr19:29282454-29282455(+) m6A CDS       25683224//25412662//22608085 chr19:29282471-29282472(+) m6A CDS       25683224//25412662//22608085 chr19:29282479-29282480(+) m6A CDS       25683224//25412662//22608085 chr19:29282505-29282506(+) m6A CDS       25683224//25412662//22608085 chr19:29282607-29282608(+) m6A CDS       25683224//25412662//22608085 chr19:29282623-29282624(+) m6A CDS       25412662//22608085 chr19:29282634-29282635(+) m6A CDS       25412662//22608085 chr19:29286321-29286322(+) m6A CDS       25683224//22608085 chr19:29286343-29286344(+) m6A CDS       25683224//22608085 chr19:29286348-29286349(+) m6A CDS       25683224//22608085 chr19:29286377-29286378(+) m6A CDS       25683224//22608085 chr19:29287923-29287924(+) m6A CDS       25683224//22608085 chr19:29287972-29287973(+) m6A CDS       25683224//22608085 chr19:29287982-29287983(+) m6A CDS       25683224//22608085 chr19:29288000-29288001(+) m6A CDS       25683224//22608085 chr19:29288026-29288027(+) m6A CDS       25683224//22608085 chr19:29288039-29288040(+) m6A CDS       25683224//22608085 chr19:29291290-29291291(+) m6A CDS       25412662//24981863//22608085 chr19:29295698-29295699(+) m6A CDS       25683224//22608085 chr19:29295726-29295727(+) m6A CDS       25683224//22608085 chr19:29298364-29298365(+) m6A CDS       25683224//22608085 chr19:29298381-29298382(+) m6A CDS       25683224//22608085 chr19:29298635-29298636(+) m6A CDS       25683224//25569111//22608085 chr19:29298648-29298649(+) m6A CDS       25683224//25569111//22608085 chr19:29298669-29298670(+) m6A CDS       25683224//25569111//22608085 chr19:29299485-29299486(+) m6A CDS       25683224//22608085 chr19:29299514-29299515(+) m6A CDS       25683224//22608085 chr19:29299556-29299557(+) m6A CDS       25683224//22608085 chr19:29299562-29299563(+) m6A CDS       25683224//22608085 chr19:29299584-29299585(+) m6A CDS       25683224//22608085 chr19:29300954-29300955(+) m6A CDS       25683224//22608085 chr19:29300985-29300986(+) m6A CDS       25683224//22608085 chr19:29301017-29301018(+) m6A CDS       25683224//22608085 chr19:29301665-29301666(+) m6A CDS       25683224//24981863 chr19:29301678-29301679(+) m6A CDS       25683224//24981863 chr19:29301705-29301706(+) m6A CDS       25683224//24981863 chr19:29301938-29301939(+) m6A CDS       25683224//24981863 chr19:29301953-29301954(+) m6A CDS       25683224//24981863 chr19:29301974-29301975(+) m6A CDS       25683224//24981863 chr19:29301992-29301993(+) m6A CDS       25683224//24981863 chr19:29302022-29302023(+) m6A CDS       25683224//24981863 chr19:29310956-29310957(+) m6A CDS       25683224//24981863//25569111 chr19:29311768-29311769(+) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085 chr19:29311801-29311802(+) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085 chr19:29311831-29311832(+) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085 chr19:29311870-29311871(+) m6A 3'UTR       25683224//25456834//24981863//25412662//25569111//22608085 chr19:29311879-29311880(+) m6A 3'UTR       25683224//25456834//24981863//25412662//25569111//22608085 chr19:29311888-29311889(+) m6A 3'UTR       25683224//25456834//24981863//25412662//25569111//22608085 chr19:29311894-29311895(+) m6A 3'UTR       25683224//25456834//24981863//25412662//25569111//22608085 chr19:29311954-29311955(+) m6A 3'UTR       25683224//25456834//24981863//25412662//25569111//22608085 chr19:29312019-29312020(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr19:29312111-29312112(+) m6A 3'UTR       25456834//24981863//25569111//26404942//22608085 chr19:29312186-29312187(+) m6A 3'UTR       24981863//25456834//26404942//22608085 chr19:29312564-29312565(+) m6A 3'UTR       24981863//22608085 chr19:29312657-29312658(+) m6A 3'UTR       25683224//24981863//25456834//22608085 chr19:29312693-29312694(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr19:29312778-29312779(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr19:29312790-29312791(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr19:29312860-29312861(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr19:29313014-29313015(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-27a-3p	Exosome Mouse metastatic mammary carcinoma cells (4T1)|Non-tumorigenic mouse mammary epithelial cells (NMuMG)     25446899 Exosome Serum     28160157 Exosome B6 BMDCs     22031862 Exosome Mouse hypothalamic neuronal cell line (GT1-7)     22965126 Exosome Bone marrow-derived macrophages     25159140 Mitochondrion Heart tissue (subsarcolemmal and interfibrillar)     26377859 Nucleus Liver cells     21862971
	Jak2	Nucleus Neuroblastoma cell line (N2A)     22406755 Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-27a-3p
Interactor2: Jak2

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).