Detail-Interactions: | |
RAID ID: | RRI00000074 |
---|---|
RNA/Protein Symbol 1: | COPG2IT1(Copg2AS) |
RNA/Protein Category 1: | lncRNA |
RNA/Protein Symbol 2: | COPG2 mRNA(Copg2) |
RNA/Protein Category 2: | mRNA |
Validated Method: | |
Tissue: | Embryos tissue//neonates tissue |
PMID: | 10788617 |
Detail description: | In addition, we identified an antisense transcript of Copg2, Copg2AS, which overlaps 3`-UTRs of Copg2 and Peg1/Mest. |
The Predicated Binding Sites between COPG2IT1 and COPG2 | |||||
By miRanda | Structure | Match Score | Energy Score | COPG2IT1 Location | COPG2 Location |
The Predicated Binding Sites between COPG2IT1 and COPG2 | ||||
By RIsearch | Structure | COPG2IT1 Location | COPG2 Location | Score |
Query: 3' GAGUUUGGAGAGGGGCUAAAAGAAAGCAGGUU---AAGCCCC 5' |||: ||| ||:|||| ||||| ||||| Target: 5' CUCG--CCU-UCUCCGA--------CGUCCUUCCGGCCGGGG 3' |
3259-3297 | 2-32 | -32.04 | |
The Predicated Binding Sites of COPG2 | |
RBPBD | |
RsiteDB | |
BindN | |
BindN+ | |
RNAbindR | |
Pprint |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.