Detail-Interactions: | |
RAID ID: | RRI00000053 |
---|---|
RNA/Protein Symbol 1: | HULC |
RNA/Protein Category 1: | lncRNA |
RNA/Protein Symbol 2: | MIR372(miR-372) |
RNA/Protein Category 2: | miRNA |
Validated Method: | |
Tissue: | |
PMID: | 21256239 |
Detail description: | Acts as a sponge/target mimic for miR-372 reducing its expression and activity. |
The Predicated Binding Sites between MIR372 and HULC | |||||
By miRanda | Structure | Match Score | Energy Score | MIR372 Location | HULC Location |
Query: 3' ucuuaucACGAGGUGUAAACucc 5' ||: || ||||| Ref: 5' uucaaccUGUGGCAAAUUUGuac 3' |
112.00 | -6.05 | 4-17 | 338-360 | |
Query: 3' ucUUAUCACGAGGUGUAAACUCc 5' | | || | | ||| ||| Ref: 5' gaACUCAUGAUGGA-AUUGGAGc 3' |
111.00 | -5.88 | 2-22 | 10-31 | |
Query: 3' ucUUAUCACGAGGUGUAAACUcc 5' :|| ||| |||||| | Ref: 5' cuGAUCGUG---GACAUUUCAac 3' |
101.00 | -3.97 | 3-22 | 145-164 |
The Predicated Binding Sites between MIR372 and HULC | ||||
By RIsearch | Structure | MIR372 Location | HULC Location | Score |
Query: 3' CCUCAAAUGUGG---------AGCACUAUUCU 5' ||||| :|||| ||| || ||| Target: 5' GGAGU--GCACCGUAUUUCUCUCGAGAACAGA 3' |
1-23 | 50-79 | -11.89 |
The Predicated Binding Sites of HULC | |
RBPBD | |
RsiteDB | |
BindN | |
BindN+ | |
RNAbindR | |
Pprint |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.