Detail-Interactions: | |
RAID ID: | RRI00000018 |
---|---|
RNA/Protein Symbol 1: | E2F3P1 |
RNA/Protein Category 1: | lncRNA |
RNA/Protein Symbol 2: | MIR20A(miR-20a) |
RNA/Protein Category 2: | miRNA |
Validated Method: | Dual Luciferase reporter assay, RT-PCR |
Tissue: | |
PMID: | 20577206 |
Detail description: | Further examples of such conservation include: miR-34 family binding site on CDK4PS (Supplementary Fig. 12); miR-182 binding site on FOXO3B (Supplementary Fig. 13); miR-17 family binding site on E2F3P1 (Supplementary Fig. 14); miR-143 and let-7 family binding sites on KRAS1P (Supplementary Fig. 15). |
The Predicated Binding Sites between MIR20A and E2F3P1 | |||||
By miRanda | Structure | Match Score | Energy Score | MIR20A Location | E2F3P1 Location |
Query: 3' gaUGGACGUGAUAUUCGUGAAAu 5' || |:: | |||||||| Ref: 5' agACAGGUGACACCAGCACUUUa 3' |
149.00 | -15.27 | 2-22 | 3128-3150 | |
Query: 3' gaUGGACGUGAUAUUCGUGAAAu 5' |::| ||:| | |||| ||| Ref: 5' acAUUUUCAUUUUUAGCAGUUUu 3' |
137.00 | -11.16 | 2-22 | 3851-3873 | |
Query: 3' gaUGGACGUGAUAUUCGUGAAau 5' |:|| | :|| ||||:|| Ref: 5' caAUCUUCCUUAAUAGCAUUUca 3' |
129.00 | -11.11 | 3-22 | 1700-1722 |
The Predicated Binding Sites between MIR20A and E2F3P1 | ||||
By RIsearch | Structure | MIR20A Location | E2F3P1 Location | Score |
Query: 3' AAAGUGCUUAUAGUGCA-----GGUAG 5' |||: |::|:|||||| :|||| Target: 5' UUUUUGGGGUGUCACGUAAAGGUCAUC 3' |
2-23 | 3345-3371 | -17.94 |
The Predicated Binding Sites of E2F3P1 | |
RBPBD | |
RsiteDB | |
BindN | |
BindN+ | |
RNAbindR | |
Pprint |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.