Detail-Interactions: | |
RAID ID: | RPI00001559 |
---|---|
RNA/Protein Symbol 1: | VEGFA mRNA(VEGF-A) |
RNA/Protein Category 1: | mRNA |
RNA/Protein Symbol 2: | TIS11b/TTP |
RNA/Protein Category 2: | Protein |
Validated Method: | |
Tissue: | |
PMID: | 23851566 |
Detail description: | AU-rich elements within the VEGF-A 3¡ä-UTR also confer hypoxia-dependent mRNA stability (81¨C83). RNA-binding proteins interacting with these 3¡ä-UTR elements include the CSD/PTB complex (Cold Shock Domain/Polypyrimidine Tract Binding Protein) (84), HuR (85), hnRNP L (86), PAIP2 [Poly(A)-Binding Interacting Protein 2] (87,88), TIS11b/TTP (89) and finally, the double strand RNA-binding protein DRBP76/NF90 (90). |
The Predicated Binding Sites between and | |||||
By miRanda | Structure | Match Score | Energy Score | Location | Location |
The Predicated Binding Sites between and | ||||
By RIsearch | Structure | Location | Location | Score |
The Predicated Binding Sites of TIS11b/TTP | |
RBPBD | |
RsiteDB | |
BindN | |
BindN+ | |
RNAbindR | |
Pprint |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.