| Detail-Interactions: | |
| RAID ID: | RPI00000694 |
|---|---|
| RNA/Protein Symbol 1: | BSC1 mRNA |
| RNA/Protein Category 1: | mRNA |
| RNA/Protein Symbol 2: | CRYZ |
| RNA/Protein Category 2: | Protein |
| Validated Method: | |
| Tissue: | |
| PMID: | 19657324 |
| Detail description: | Therefore the 3`UTR of BSC1-mRNA is a target for zeta-crystallin. |
| The Predicated Binding Sites between BSC1 mRNA and CRYZ | |||||
| By miRanda | Structure | Match Score | Energy Score | BSC1 mRNA Location | CRYZ Location |
| The Predicated Binding Sites between BSC1 mRNA and CRYZ | ||||
| By RIsearch | Structure | BSC1 mRNA Location | CRYZ Location | Score |
| The Predicated Binding Sites of CRYZ | |
| RBPBD | |
| RsiteDB | |
| BindN |
>sp|Q08257|QOR_HUMAN Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1 Sequence: MATGQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYS Prediction: --+-++--+--+----------+-+--------+------------------+-++++++ Confidence: 665646547895986877645458636876474485397929475582373245778887 Sequence: RKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEK Prediction: ++--------+-------------+--++--+--++++-+---------------+---- Confidence: 862354242544867996867754632874383355554623274399897528247652 Sequence: LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTA Prediction: -----------------+--------+----------+-----------+-+--+---+- Confidence: 766227666676262835678426577664286636563344466526696467577353 Sequence: GTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHG Prediction: -++---+-----------------+--+-+++-------------------------++- Confidence: 375242487734784577583582565575556523887999999959462276376545 Sequence: GRVIVVGSRGTIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPVIG Prediction: -+------+-+-+-+-+-+-------------++++-+---------------------- Confidence: 487545328354544353426253277673645565244456886836777884936876 Sequence: SQYPLEKVAEAHENIIHGSGATGKMILLL Prediction: ------------------+--+-+----- Confidence: 32247639879777794542374579999 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| BindN+ |
>sp|Q08257|QOR_HUMAN Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1 Sequence: MATGQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYS Prediction: +-+--+--+------------------------------------+-+-+--------+- Confidence: 425214428341664444447879799999784246574945334423131114324342 Sequence: RKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEK Prediction: ---------------------------+--+----------------------------- Confidence: 134544224422342985453433142422313279554434277388863227516623 Sequence: LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTA Prediction: ----------------++--------------------+--++---+--+++--+----- Confidence: 759787999774551635465568451554276733215225523254464425745512 Sequence: GTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHG Prediction: ++---------------------------------------------------------- Confidence: 342121367678797868381465685898698765755977763234283589765113 Sequence: GRVIVVGSRGTIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPVIG Prediction: ---------------------+-------------------------------------- Confidence: 214738132347486722347362142342432222356578999968996896957876 Sequence: SQYPLEKVAEAHENIIHGSGATGKMILLL Prediction: ------------------+--+-+----- Confidence: 63536445789757694262142745346 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| RNAbindR |
>Q08257|CRYZ Sequence: MATGQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYS Prediction: --------+-----+++++++------------+-+-------++++++++---+---+- Confidence: 122034115103045887866130001111322645312341267767657343543364 Sequence: RKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEK Prediction: ++----------------------++-+---+---++++++++----------------- Confidence: 553332313111010000102332583743263046557988833400000140131323 Sequence: LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTA Prediction: -----------+-+++-+----+-+-++--+---+++++++++------+----+--+++ Confidence: 010221123025457636432263616542532385788666742230274121734786 Sequence: GTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHG Prediction: +++++-------------+-++-+-----------+--+-------++------------ Confidence: 895663101211122333649526331101002226425141414355332410300234 Sequence: GRVIVVGSRGTIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPVIG Prediction: -+---++-++++--+------+------+++++++--------------------+---+ Confidence: 151137647775325034131631422497897774101211121010010013064325 Sequence: SQYPLEKVAEAHENIIHGSGATGKMILLL Prediction: +-+++-+---------+-+++-++------ Confidence: 847653631212110152888468223210 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| Pprint |
Sequence: MATGQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYS Prediction: ++++++--+------++--------------++---+-+-+-+++++++++-+------- Confidence: 899889227100102363221010000002066220405080999899997040200100 Sequence: RKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEK Prediction: --+---+-+-+++------+++++---++++--------++----++--------+---- Confidence: 124220506295430000239858121945400000000543222530000000050100 Sequence: LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTA Prediction: -------------++-++--++---+-+-+----+--+++++----+--+-++---+--+ Confidence: 000000000000055057215400131404210140056436300130153650003104 Sequence: GTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHG Prediction: +++++------------------------------------------+----------+- Confidence: 496681100000100000001000000000000000012100102103000000000270 Sequence: GRVIVVGSRGTIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPVIG Prediction: -----------++----+-----+++--+--+-+-------------------------- Confidence: 000000002025412034210105342133341731010000000012000001000000 Sequence: SQYPLEKVAEAHENIIHGSGATGKMILLL Prediction: -----------------+++++++-+-+- Confidence: 00000000000000012799865804242 ***Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. ***Confidence: from level 0 (lowest) to level 9 (highest). |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.