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ViRBase all data(txt): All Virus-Host Interactions

ViRBase all data(xlsx): All Virus-Host Interactions

ViRBase API


URL form

http://www.rna-society.org/virbase/api.php?type=keyword&&keyword=**&&fuzzy=ture
http://www.rna-society.org/virbase/api.php?type=category&&ncrnaCategory=**&&InteractorCategory=**
http://www.rna-society.org/virbase/api.php?type=method&&method=**

  • type=Search type
  • keyword=The molecular that the user wants to search
  • ncrnaCategory/InteractCategory=The category of ncRNA/Interactor
  • method=The method that the user wants to search

  • Specification of Tag Values

    For "type" tag:

    Valid ValuesNote
    keywordSearching by ncRNA/Interactor symbol
    categorySearching by ncRNA/Interactor category
    methodSearching by validated method

    For "ncrnaCategory/InteractorCategory" tag:

    Valid Values
    miRNA
    lncRNA
    mRNA
    protein
    snoRNA
    shRNA

    For "method" tag:

    Valid Values
    ChIP
    PCR
    Reporter assay
    Microarray
    Western blot
    Immunofluorescence
    Luciferase reporter assay
    ...

    Note: ViRBase supports fuzzy queries, users are able to obtain more result by streamlining input, eg: just input "Luciferase" instead of "Luciferase reporter assay".


    Examples

    Searching for interactions which include CXCR4:
    http://www.rna-society.org/virbase/api.php?type=keyword&&keyword=CXCR4

    Searching for all of the interactions between miRNA and lncRNA
    http://www.rna-society.org/virbase/api.php?type=category&&ncrnaCategory=miRNA&&InteractorCategory=lncRNA

    Searching for all of the interactions which discovered Luciferase reporter assay
    http://www.rna-society.org/virbase/api.php?type=method&&method=Luciferase reporter assay