Basic Information
| RNALocate ID: | RLID:02001011 |
| RNA Symbol: | MALAT1 |
| Localization: | Nucleus |
RNA Information
| RNA Name: | MALAT1 |
| RNA Category: | lncRNA |
| Species: | Iguana iguana |
Localization Information
| PubMed ID: | 28538188 |
| Tissue/Cell Line: | IgH-2 cells|Periphery of seminiferous tubules |
| Method: | Northern blot|RNA FISH |
|
Northern blot analysis shows that MALAT1 is enriched in nuclei of cultured cells of zebrafish (ZFL), lizard (IgH-2), and human (U2OS). Originally published in Cell Rep. Zhang B, et al, 2017. Reproduced under the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) |
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| Description: | Similar to human and mouse, lizard and zebrafish MALAT1 are also enriched in the cell nucleus (Figure 2e). Interestingly, Malat1 is highly expressed in cells localized at the periphery of seminiferous tubules and enriched in a punctuate nuclear distribution (Figure 5f). |
Other Subcellular Localization
| RNALocate ID | Localization | Tissue/Cell line | PubMed ID |
| RLID:02000386 | Nucleus | ZFL cells | 28538188 |
| RLID:02000501 | Chromatin | Breast cancer cell line (SKBR3) | 28652379 |
| RLID:02000502 | Cytoplasm | HEK-293T cells|Mammary epithelium cell line (HC11) | 31863590 |
| RLID:02000503 | Cytosol | Human myelogenous leukemia cell line (K-562) | 21613539 |
| RLID:02000504 | Mitochondrion | HCC cell line (HepG2) | 31218107 |
| RLID:02000505 | Nucleus | Human osteosarcoma cell line (U2OS) | 28423669 |
| RLID:02000506 | Nucleus | HeLa cells | 28663102 |
| RLID:02000507 | Nucleus | WI-38 cells | 29133588 |
| RLID:02000508 | Nucleus | Human brain microvascular endothelial cells | 30419554 |
| RLID:02000509 | Nuclear speckle | Breast cancer cell line (MCF-7) | 28652379 |
| RLID:02000510 | Nuclear speckle | Retinal microvascular endothelial cells | 30815547 |
| RLID:02000511 | Nuclear speckle | U2OS cells | 31085639 |
| RLID:02000512 | Nuclear speckle | HEK-293T cells|Mammary epithelium cell line (HC11) | 31863590 |
| RLID:02000513 | Nuclear speckle | HeLa-TO cells | 22355166 |
| RLID:02000514 | Nucleoplasm | WI-38 cells | 29133588 |
| RLID:02000515 | Nucleus | Human cervical cancer cell line (HeLa) | 28216671 |
| RLID:02000516 | Nucleus | U2OS cells | 28538188 |
| RLID:02000517 | Nucleus | Breast cancer cell lines (MDA-MB-468|SKBR3) | 28652379 |
| RLID:02000518 | Nucleus | HeLa cells | 29335281 |
| RLID:02000519 | Nucleus | Lung cancer cell line (A549) | 30548064 |
| RLID:02000520 | Nucleus | Vascular smooth muscle cells | 31696492 |
| RLID:02000521 | Nucleus | Fibroblasts|Lymphoblasts | 17270048 |
| RLID:02000522 | Nucleus | Cell line (HeLa) | 19041754 |
| RLID:02000523 | Nucleus | HeLa cells | 20797886 |
| RLID:02000524 | Nucleus | Motor neurons | 22070123 |
| RLID:02000525 | Nucleus | Human cervical cancer cell line (HeLa) | 22078878 |
| RLID:02000526 | Nucleus | CLTon cells | 22855529 |
| RLID:02000527 | Nucleus | HeLa cells | 23073843 |
| RLID:02000528 | Nucleus | Cell line (HeLa) | 23152763 |
| RLID:02000529 | Nucleus | Colon cancer cells | 24393600 |
| RLID:02000530 | Nucleus | HeLa cells | 25630241 |
| RLID:02001145 | Cytoplasm | Lung cancer cell lines (A549|H1299) | 34012919 |
| RLID:12000064 | Exosome | Thyroid papillary carcinoma cell line (TPC-1) | 29967342 |
| RLID:12000065 | Exosome | HeLa cells | 24205503 |
| RLID:22000052 | Speckle periphery | HeLa cells|WI-38 cells | 29133588 |
| RLID-D:02000317 | Chromatin | HeLa-S3 cells|K562 cells | |
| RLID-D:02000618 | Cytosol | HCC cell line (HepG2)|HeLa-S3 cells|K562 cells | |
| RLID-D:02000717 | Insoluble cytoplasm | K562 cells | |
| RLID-D:02000824 | Membrane | HCC cell line (HepG2)|K562 cells | |
| RLID-D:02001085 | Nucleolus | K562 cells | |
| RLID-D:02001487 | Nucleoplasm | K562 cells | |
| RLID-D:02002025 | Nucleus | HCC cell line (HepG2)|HeLa-S3 cells|K562 cells | |
| RLID-D:12004468 | Exosome | Serum |
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