Basic Information
| RNALocate ID: | RLID:00014897 |
| RNA Symbol: | CCDC88A |
| Localization: | Ribosome |
RNA Information
| RNA Name: | NM_018084 |
| RNA ID: | NCBI:55704|Ensembl:ENSG00000115355 |
| RNA Category: | mRNA |
| Species: | Homo sapiens |
| Alias: | APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL |
Localization Information
| PubMed ID: | 22199352 |
| Tissue/Cell Line: | HEK-293 cells |
| Method: | Next-generation RNA sequencing |
| Description: | Reads from mRNA and ribosome footprinting libraries were then remapped to this subset of mRNAs, allowing each read to map to two locations, allowing two mismatches in a 25-nt seed region, and enabling the best and strata options. Mapping details are provided in supplemental Table S1 with abundance and ribosome loading of each mRNA specified in supplemental Table S2. Data are collected from Table S2. |
Homology Information
| RNA Symbol | Gene ID | Species | Detail |
| Ccdc88a | NCBI:108686 | Mus musculus | Go to |
Other Subcellular Localization
| RNALocate ID | Localization | Tissue/Cell line | PubMed ID |
| RLID:00014896 | Cytosol | Human myelogenous leukemia cell line (K-562) | 21613539 |
| RLID-D:00004370 | Chromatin | K562 cells | |
| RLID-D:00011307 | Cytosol | HCC cell line (HepG2)|K562 cells | |
| RLID-D:00014681 | Insoluble cytoplasm | HCC cell line (HepG2) | |
| RLID-D:00017151 | Membrane | HCC cell line (HepG2)|K562 cells | |
| RLID-D:00021876 | Nucleolus | K562 cells | |
| RLID-D:00028719 | Nucleoplasm | K562 cells | |
| RLID-D:00037060 | Nucleus | HCC cell line (HepG2)|HeLa-S3 cells|K562 cells | |
| RLID-D:10011027 | Exosome | Blood |
RNA Interaction Information
| Resource | RNA Symbol | Species | Link | RNALocate ID |
| RNAInter | hsa-miR-101-5p | Homo sapiens | RR00292561 |
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