Basic Information
RNALocate ID: RLID:00004289
RNA Symbol: NET1
Localization: Ribosome
Localization from RNA-seq Dataset:  
RNA Information
RNA Name: NET1
RNA ID: NCBI:10276|Ensembl:ENSG00000173848
RNA Category: mRNA
Species: Homo sapiens
Alias: ARHGEF8|NET1A
Sequence:
Localization Information
PubMed ID: 24393600
Tissue/Cell Line: Colon cancer cells
Method: Next-generation RNA sequencing
Description: The RNA composition of the subcellular fractions differs significantly from each other, but lncRNAs are found in all locations. A subset of specific lncRNAs is enriched in the nucleus but surprisingly the majority is enriched in the cytosol and in ribosomal fractions. The ribosomal enriched lncRNAs include H19 and TUG1. Most studies on lncRNAs have focused on the regulatory function of these transcripts in the nucleus. We demonstrate that only a minority of all lncRNAs are nuclear enriched. Our findings suggest that many lncRNAs may have a function in cytoplasmic processes, and in particular in ribosome complexes. Data were collected from additional file 5.Overall, we consider clusters I, II and III as enriched in the nucleus; IV and V as enriched in the ribosome-free cytosol; and VI, VII, VIII, IX and X as enriched in the ribosomes.
Homology Information
RNA Symbol Gene ID Species Detail
NET1 NCBI:487147 Canis lupus familiaris Go to
Other Subcellular Localization
RNALocate ID Localization Tissue/Cell line PubMed ID
RLID:00004287 Cytosol Human myelogenous leukemia cell line (K-562) 21613539
RLID:00004288 Ribosome HEK-293 cells 22199352
RLID:00012627 Pseudopodium MSV-MDCK-INV cells 18845542
RLID-D:00000168 Chromatin K562 cells
RLID-D:00007692 Cytosol HCC cell line (HepG2)
RLID-D:00013874 Insoluble cytoplasm HCC cell line (HepG2)
RLID-D:00015324 Membrane K562 cells
RLID-D:00018631 Nucleolus K562 cells
RLID-D:00024526 Nucleoplasm K562 cells
RLID-D:00032046 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells
RLID-D:10000544 Exosome Blood
RNA Interaction Information
Resource RNA Symbol Species Link RNALocate ID
RNAInter SNHG16 Homo sapiens RR00994354
TOP