The Detail page: representing the detail information for virus-host related ncRNA interaction;
The Network page: representing the interaction sub-network of interacting ncRNA/Interactor.
- Detail
- Binding
- Network
| Detail: | |
| Vhid: | HVID00012031 |
|---|---|
| Virus: | Severe acute respiratory syndrome coronavirus(SARS-CoV) |
| Host Species: | Mus musculus |
| ncRNA Source: | Host |
| ncRNA Category: | LncRNA |
| ncRNA Symbol: | chr1:135599257-135601738 |
| Tissue: | mouse-adapted strain MA15 that is lethal in BALB/c mice and that causes 10 to 15% weight loss in young C56BL/6 mice |
| Expression Direction of ncRNA: | Downregulation |
| Interactor in Virus or Host: | - |
| Interactor Category: | - |
| Interactor Symbol: | - |
| Expression Direction of Interactor: | - |
| Validated Method: | Sequencing and read mapping, Quantitative real-time PCR, Sequencing and read mapping, ncRNA annotations and the estimation of expression levels. |
| PMID: | 20978541 |
| Detailed Description: | We found that 509 of these loci were differentially expressed during SARS-CoV MA15 infection (Fig. 3), 485 of which had more than 2.5-fold change in at least one of four mouse strains during infection, and 209 of which were all upregulated or all downreguted by at least 1.8-fold in three or more mouse strains (see Tables S2 and S3 in the supplemental material). |
The 'First Node' or 'Second Node' option represents the sub-network of interacting ncRNA/Interactor with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting ncRNA/Interactor with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.