The Detail page: representing the detail information for virus-host related ncRNA interaction;
The Network page: representing the interaction sub-network of interacting ncRNA/Interactor.
- Detail
- Binding
- Network
| Detail: | |
| Vhid: | HHID00011746 |
|---|---|
| Virus: | Soybean mosaic virus(SMV) |
| Host Species: | Glycine max |
| ncRNA Source: | Host |
| ncRNA Category: | miRNA |
| ncRNA Symbol: | gma-miR160 |
| Tissue: | Stem-loop |
| Expression Direction of ncRNA: | Upregulation |
| Interactor in Virus or Host: | Host |
| Interactor Category: | Protein |
| Interactor Symbol: | ARF |
| Expression Direction of Interactor: | - |
| Validated Method: | 5'-RACE analysis. |
| PMID: | 23328897 |
| Detailed Description: | In our experiments, miR160 and miR393 were up-regulated after SMV infection. Auxin response factor(ARF) is a class of transcription factors that play a role in plant signal transduction and development. miR160, miR167 and miR390 all target ARFs, directly or indirectly. we predicted 346 potential targets of these identified miRNAs, and verified 12 targets by modified 5'-RACE analysis. Finally, three miRNAs(miR160, miR393 and miR1510) that are involved in plant resistance were observed to respond to SMV infection. |
The 'First Node' or 'Second Node' option represents the sub-network of interacting ncRNA/Interactor with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting ncRNA/Interactor with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.