Detail Information

Basic Information:


  VIRBase ID:  

VHID00706758

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol sars-cov-2-mir-R3-3p MAPK4
miRBase
Accession/Entrez ID		 sars-cov-2-mir-R3-3p 5596
Organism SARS-CoV-2 (NC_045512.2) Homo sapiens
Category miRNA mRNA
Alias - ERK-4//ERK4//p63-MAPK//p63MAPK//PRKM4

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MAPK4
chr18:48208344(+) A-I      intronic
chr18:48249977(+) A-I      intronic
chr18:48249969(+) A-I      intronic
chr18:48215419(+) A-I      intronic
chr18:48215411(+) A-I      intronic
chr18:48215409(+) A-I      intronic
chr18:48215390(+) A-I      intronic
chr18:48215379(+) A-I      intronic
chr18:48145849(+) A-I      intronic
chr18:48145817(+) A-I      intronic
chr18:48145801(+) A-I      intronic
chr18:48145839(+) A-I      intronic
chr18:48208370(+) A-I      intronic
chr18:48208358(+) A-I      intronic
chr18:48208353(+) A-I      intronic
chr18:48208343(+) A-I      intronic
chr18:48208338(+) A-I      intronic
chr18:48208327(+) A-I      intronic
chr18:48208326(+) A-I      intronic
chr18:48208325(+) A-I      intronic
chr18:48208321(+) A-I      intronic
chr18:48208320(+) A-I      intronic
chr18:48208315(+) A-I      intronic
chr18:48123154(+) A-I      intronic
chr18:48123148(+) A-I      intronic
chr18:48123131(+) A-I      intronic
chr18:48123110(+) A-I      intronic
chr18:48123108(+) A-I      intronic
chr18:48123104(+) A-I      intronic
chr18:48123103(+) A-I      intronic
chr18:48123102(+) A-I      intronic
chr18:48208334(+) A-I      intronic
chr18:48197076(+) A-I      intronic
chr18:48196352(+) A-I      intronic
chr18:48196344(+) A-I      intronic
chr18:48169673(+) A-I      intronic
chr18:48169668(+) A-I      intronic
chr18:48215674(+) A-I      intronic
chr18:48209590(+) A-I      intronic
chr18:48209589(+) A-I      intronic
chr18:48209583(+) A-I      intronic
chr18:48209559(+) A-I      intronic
chr18:48197077(+) A-I      intronic
chr18:48217492(+) A-I      intronic
chr18:48115126(+) A-I      intronic
chr18:48215647(+) A-I      intronic
chr18:48219604(+) A-I      intronic
chr18:48221540(+) A-I      intronic
chr18:48249978(+) A-I      intronic
chr18:48250681(+) A-I      intronic
chr18:48094455(+) A-I      intronic
chr18:48250205(+) A-I      intronic
chr18:48217638(+) A-I      intronic
chr18:48204105(+) A-I      intronic
chr18:48217560(+) A-I      intronic
chr18:48250523(+) A-I      intronic
chr18:48209516(+) A-I      intronic
chr18:48245196(+) A-I      intronic
chr18:48250482(+) A-I      intronic
chr18:48127357(+) A-I      intronic
chr18:48217599(+) A-I      intronic
chr18:48094445(+) A-I      intronic
chr18:48250154(+) A-I      intronic
chr18:48250524(+) A-I      intronic
chr18:48244823(+) A-I      intronic
chr18:48244771(+) A-I      intronic
chr18:48250459(+) A-I      intronic
chr18:48238582(+) A-I      intronic
chr18:48219624(+) A-I      intronic
chr18:48250155(+) A-I      intronic
chr18:48250693(+) A-I      intronic
chr18:48228477(+) A-I      intronic
chr18:48200171(+) A-I      intronic
chr18:48244689(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MAPK4
chr18:48189466-48189467(+) m6A 5'UTR//exon//intron       24284625
chr18:48189625-48189626(+) m6A 5'UTR//intron       24284625//22575960
chr18:48189701-48189702(+) m6A 5'UTR//intron       24284625//22575960//22608085
chr18:48189740-48189741(+) m6A 5'UTR//intron       24284625//22575960//22608085
chr18:48189811-48189812(+) m6A 5'UTR//intron       24284625//22575960//22608085
chr18:48189873-48189874(+) m6A 5'UTR//intron       24284625//22575960//22608085
chr18:48189971-48189972(+) m6A 5'UTR//intron       24284625//22575960//22608085
chr18:48190069-48190070(+) m6A 5'UTR//intron       24284625//22575960//22608085
chr18:48190085-48190086(+) m6A 5'UTR//intron       24284625//22575960//22608085
chr18:48190207-48190208(+) m6A 5'UTR//intron       24284625//25456834//24981863//22575960//22608085
chr18:48190227-48190228(+) m6A 5'UTR//intron       24284625//25456834//24981863//22575960//22608085
chr18:48190268-48190269(+) m6A 5'UTR//intron       24284625//25456834//22575960//22608085
chr18:48190443-48190444(+) m6A CDS//intron       24284625//22575960
chr18:48190545-48190546(+) m6A CDS//intron       24284625
chr18:48190655-48190656(+) m6A CDS//intron       24284625
chr18:48252529-48252530(+) m6A CDS//intron       24284625//22575960
chr18:48255550-48255551(+) m6A 3'UTR//CDS       24284625//22575960
chr18:48255646-48255647(+) m6A 3'UTR//CDS       24284625//25456834//22575960
chr18:48255658-48255659(+) m6A 3'UTR//CDS       24284625//25456834//22575960
chr18:48255775-48255776(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960
chr18:48255835-48255836(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960
chr18:48255892-48255893(+) m6A 3'UTR//CDS       25456834//24981863//22575960
chr18:48256123-48256124(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085
chr18:48256132-48256133(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085
chr18:48256139-48256140(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085
chr18:48256194-48256195(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085
chr18:48256261-48256262(+) m6A 3'UTR       24284625//25456834//22575960//22608085
chr18:48256336-48256337(+) m6A 3'UTR       24284625//25456834
chr18:48256380-48256381(+) m6A 3'UTR       24284625//25456834
chr18:48256423-48256424(+) m6A 3'UTR       24284625
chr18:48256428-48256429(+) m6A 3'UTR       24284625
chr18:48256469-48256470(+) m6A 3'UTR       24284625
chr18:48256504-48256505(+) m6A 3'UTR       24284625
chr18:48257626-48257627(+) m6A 3'UTR       24284625
chr18:48257658-48257659(+) m6A 3'UTR       24284625
chr18:48257688-48257689(+) m6A 3'UTR       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MAPK4
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: sars-cov-2-mir-R3-3p
Interactor2: MAPK4

Evidence Support:


Prediction-Evidence miRanda//miRDB//Targetscan
Support Database ViRBase

References:


PMID 33398248 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Cytotoxin and gene regulation associated genes targeted by SARS-CoV-2 encoded miRNAs.

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