Detail Information

Basic Information:


  VIRBase ID:  

VHID00706701

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol sars-cov-2-mir-D6-3p SOCS4
miRBase
Accession/Entrez ID		 sars-cov-2-mir-D6-3p 122809
Organism SARS-CoV-2 (NC_045512.2) Homo sapiens
Category miRNA mRNA
Alias - SOCS7

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SOCS4
chr14:55507734(+) A-I      intronic
chr14:55507703(+) A-I      intronic
chr14:55507744(+) A-I      intronic
chr14:55507762(+) A-I      intronic
chr14:55501779(+) A-I      intronic
chr14:55507846(+) A-I      intronic
chr14:55507872(+) A-I      intronic
chr14:55501274(+) A-I      intronic
chr14:55507806(+) A-I      intronic
chr14:55503966(+) A-I      intronic
chr14:55506370(+) A-I      intronic
chr14:55500691(+) A-I      intronic
chr14:55499640(+) A-I      intronic
chr14:55501296(+) A-I      intronic
chr14:55501434(+) A-I      intronic
chr14:55501443(+) A-I      intronic
chr14:55501479(+) A-I      intronic
chr14:55501679(+) A-I      intronic
chr14:55500696(+) A-I      intronic
chr14:55501734(+) A-I      intronic
chr14:55503642(+) A-I      intronic
chr14:55501766(+) A-I      intronic
chr14:55501813(+) A-I      intronic
chr14:55503584(+) A-I      intronic
chr14:55503668(+) A-I      intronic
chr14:55503683(+) A-I      intronic
chr14:55503707(+) A-I      intronic
chr14:55503713(+) A-I      intronic
chr14:55503740(+) A-I      intronic
chr14:55503911(+) A-I      intronic
chr14:55503962(+) A-I      intronic
chr14:55504037(+) A-I      intronic
chr14:55504052(+) A-I      intronic
chr14:55504422(+) A-I      intronic
chr14:55507467(+) A-I      intronic
chr14:55504446(+) A-I      intronic
chr14:55506071(+) A-I      intronic
chr14:55507315(+) A-I      intronic
chr14:55507341(+) A-I      intronic
chr14:55507347(+) A-I      intronic
chr14:55507351(+) A-I      intronic
chr14:55507739(+) A-I      intronic
chr14:55501799(+) A-I      intronic
chr14:55503691(+) A-I      intronic
chr14:55501540(+) A-I      intronic
chr14:55503618(+) A-I      intronic
chr14:55500699(+) A-I      intronic
chr14:55503571(+) A-I      intronic
chr14:55507677(+) A-I      intronic
chr14:55508338(+) A-I      intronic
chr14:55501297(+) A-I      intronic
chr14:55504312(+) A-I      intronic
chr14:55507780(+) A-I      intronic
chr14:55503754(+) A-I      intronic
chr14:55504384(+) A-I      intronic
chr14:55508589(+) A-I      intronic
chr14:55500687(+) A-I      intronic
chr14:55504329(+) A-I      intronic
chr14:55503819(+) A-I      intronic
chr14:55508332(+) A-I      intronic
chr14:55507795(+) A-I      intronic
chr14:55500595(+) A-I      intronic
chr14:55501762(+) A-I      intronic
chr14:55503608(+) A-I      intronic
chr14:55503963(+) A-I      intronic
chr14:55506503(+) A-I      intronic
chr14:55501696(+) A-I      intronic
chr14:55499707(+) A-I      intronic
chr14:55501550(+) A-I      intronic
chr14:55506334(+) A-I      intronic
chr14:55508627(+) A-I      intronic
chr14:55501853(+) A-I      intronic
chr14:55504117(+) A-I      intronic
chr14:55501844(+) A-I      intronic
chr14:55503687(+) A-I      intronic
chr14:55501736(+) A-I      intronic
chr14:55501374(+) A-I      intronic
chr14:55501788(+) A-I      intronic
chr14:55506539(+) A-I      intronic
chr14:55501808(+) A-I      intronic
chr14:55507641(+) A-I      intronic
chr14:55503579(+) A-I      intronic
chr14:55501759(+) A-I      intronic
chr14:55501718(+) A-I      intronic
chr14:55507417(+) A-I      intronic
chr14:55501520(+) A-I      intronic
chr14:55499549(+) A-I      intronic
chr14:55500690(+) A-I      intronic
chr14:55513370(+) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SOCS4
chr14:55513370(+) A-I exon 3'UTR    19478186

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SOCS4
chr14:55493951-55493952(+) m6A 5'UTR       24284625//25456834//24981863//22608085
chr14:55493979-55493980(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085
chr14:55494015-55494016(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22608085
chr14:55494068-55494069(+) m6A 5'UTR//exon       24284625//24209618//24981863
chr14:55494126-55494127(+) m6A 5'UTR//exon       24284625
chr14:55498662-55498663(+) m6A 5'UTR//exon//intron       24981863
chr14:55509695-55509696(+) m6A 5'UTR       24981863//27773535//22608085
chr14:55509810-55509811(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr14:55509909-55509910(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr14:55509930-55509931(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr14:55509949-55509950(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr14:55509988-55509989(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr14:55510034-55510035(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr14:55510040-55510041(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr14:55510136-55510137(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr14:55510252-55510253(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr14:55510263-55510264(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr14:55510315-55510316(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr14:55510405-55510406(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr14:55510492-55510493(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr14:55510536-55510537(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr14:55510588-55510589(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr14:55510667-55510668(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr14:55510693-55510694(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr14:55510708-55510709(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr14:55510766-55510767(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr14:55510844-55510845(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr14:55510855-55510856(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr14:55510880-55510881(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr14:55510908-55510909(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr14:55510941-55510942(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr14:55511069-55511070(+) m6A CDS       24209618//24981863//22608085
chr14:55511850-55511851(+) Y 3'UTR       26075521
chr14:55513780-55513781(+) m6A 3'UTR       24209618//24981863
chr14:55514724-55514725(+) Y 3'UTR       26075521
chr14:55515189-55515190(+) Y 3'UTR       26075521
chr14:55515397-55515398(+) Y 3'UTR       26075521
chr14:55515677-55515678(+) m6A 3'UTR       24981863//22608085
chr14:55515687-55515688(+) m6A 3'UTR       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SOCS4
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: sars-cov-2-mir-D6-3p
Interactor2: SOCS4

Evidence Support:


Prediction-Evidence miRanda//miRDB//Targetscan
Support Database ViRBase

References:


PMID 33398248 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Cytotoxin and gene regulation associated genes targeted by SARS-CoV-2 encoded miRNAs.

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