Detail Information

Basic Information:


  VIRBase ID:  

VHID00706700

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol sars-cov-2-mir-D6-3p CXCL16
miRBase
Accession/Entrez ID		 sars-cov-2-mir-D6-3p 58191
Organism SARS-CoV-2 (NC_045512.2) Homo sapiens
Category miRNA mRNA
Alias - CXCLG16//SR-PSOX//SRPSOX

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CXCL16
chr17:4637275(-) A-I      3'UTR
chr17:4637392(-) A-I      3'UTR
chr17:4637283(-) A-I      3'UTR
chr17:4640261(-) A-I      intronic
chr17:4637419(-) A-I      3'UTR
chr17:4640251(-) A-I      intronic
chr17:4637271(-) A-I      3'UTR
chr17:4637356(-) A-I      3'UTR
chr17:4637364(-) A-I      3'UTR
chr17:4637395(-) A-I      3'UTR
chr17:4640294(-) A-I      intronic
chr17:4637382(-) A-I      3'UTR
chr17:4640290(-) A-I      intronic
chr17:4637432(-) A-I      3'UTR
chr17:4640291(-) A-I      intronic
chr17:4640285(-) A-I      intronic
chr17:4637346(-) A-I      3'UTR
chr17:4641340(-) A-I      intronic
chr17:4641342(-) A-I      intronic
chr17:4637438(-) A-I      3'UTR
chr17:4637248(-) A-I      3'UTR
chr17:4637425(-) A-I      3'UTR
chr17:4637311(-) A-I      3'UTR
chr17:4637246(-) A-I      3'UTR
chr17:4637475(-) A-I      3'UTR
chr17:4637457(-) A-I      3'UTR
chr17:4637314(-) A-I      3'UTR
chr17:4637337(-) A-I      3'UTR
chr17:4637340(-) A-I      3'UTR
chr17:4637260(-) A-I      3'UTR
chr17:4640210(-) A-I      intronic
chr17:4637497(-) A-I      3'UTR
chr17:4641325(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CXCL16
chr17:4637160-4637161(-) m6A 3'UTR//exon       27773535
chr17:4637634-4637635(-) m6A 3'UTR//exon       27773535
chr17:4637740-4637741(-) m6A 3'UTR//exon       27773535
chr17:4637767-4637768(-) m6A 3'UTR//exon       27773535
chr17:4638500-4638501(-) m6A CDS//exon       27773535
chr17:4638541-4638542(-) m6A CDS//exon       24981863//27773535
chr17:4638596-4638597(-) m6A CDS//exon       24981863//27773535
chr17:4638622-4638623(-) m6A CDS//exon       24284625//24981863//27773535
chr17:4638795-4638796(-) m6A CDS//exon       27773535
chr17:4639591-4639592(-) m6A exon//intron       27773535
chr17:4642718-4642719(-) m6A 5'UTR       27371828//27773536
chr17:4643008-4643009(-) m6A 5'UTR       27773536
chr17:4643013-4643014(-) m6A 5'UTR       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CXCL16
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: sars-cov-2-mir-D6-3p
Interactor2: CXCL16

Evidence Support:


Prediction-Evidence miRanda//miRDB//Targetscan
Support Database ViRBase

References:


PMID 33398248 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Cytotoxin and gene regulation associated genes targeted by SARS-CoV-2 encoded miRNAs.

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