Detail Information

Basic Information:


  VIRBase ID:  

VHID00706697

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol sars-cov-2-mir-D6-3p JARID1C
miRBase
Accession/Entrez ID		 sars-cov-2-mir-D6-3p 8242
Organism SARS-CoV-2 (NC_045512.2) Homo sapiens
Category miRNA mRNA
Alias - DXS1272E//JARID1C//MRX13//MRXJ//MRXSCJ//MRXSJ//SMCX//XE169

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR JARID1C
chrX:53238266(-) A-I      intronic
chrX:53242043(-) A-I      intronic
chrX:53243353(-) A-I      intronic
chrX:53238249(-) A-I      intronic
chrX:53238294(-) A-I      intronic
chrX:53237145(-) A-I      intronic
chrX:53237149(-) A-I      intronic
chrX:53242175(-) A-I      intronic
chrX:53237049(-) A-I      intronic
chrX:53237820(-) A-I      intronic
chrX:53237826(-) A-I      intronic
chrX:53238250(-) A-I      intronic
chrX:53238271(-) A-I      intronic
chrX:53241925(-) A-I      intronic
chrX:53237726(-) A-I      intronic
chrX:53238216(-) A-I      intronic
chrX:53238245(-) A-I      intronic
chrX:53242174(-) A-I      intronic
chrX:53237009(-) A-I      intronic
chrX:53242035(-) A-I      intronic
chrX:53237068(-) A-I      intronic
chrX:53238162(-) A-I      intronic
chrX:53235863(-) A-I      intronic
chrX:53235801(-) A-I      intronic
chrX:53242071(-) A-I      intronic
chrX:53237022(-) A-I      intronic
chrX:53238177(-) A-I      intronic
chrX:53242003(-) A-I      intronic
chrX:53242177(-) A-I      intronic
chrX:53238158(-) A-I      intronic
chrX:53242101(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED JARID1C
chrX:53235963(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase JARID1C
chrX:53220535-53220536(-) m6A 3'UTR       27773535
chrX:53220587-53220588(-) m6A 3'UTR       27773535
chrX:53220611-53220612(-) m6A 3'UTR       27773535
chrX:53220729-53220730(-) m6A 3'UTR       27773535
chrX:53221102-53221103(-) m6A 3'UTR       24981863//27773535
chrX:53221130-53221131(-) m6A 3'UTR       24981863//27773535
chrX:53221183-53221184(-) m6A 3'UTR       24981863//27773535
chrX:53221425-53221426(-) m6A 3'UTR       24981863
chrX:53221432-53221433(-) m6A 3'UTR       24981863
chrX:53221600-53221601(-) m6A 3'UTR       24981863//28052920
chrX:53221658-53221659(-) m6A 3'UTR       24981863//28052920//27773535
chrX:53221802-53221803(-) m6A 3'UTR       24981863//27773535
chrX:53221810-53221811(-) m6A 3'UTR       24981863//27773535
chrX:53221831-53221832(-) m6A 3'UTR       24981863//27773535
chrX:53221904-53221905(-) m6A 3'UTR       27773535
chrX:53221971-53221972(-) m6A 3'UTR//CDS       27773535
chrX:53222114-53222115(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chrX:53222126-53222127(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chrX:53222237-53222238(-) m6A CDS//intron       24284625//24209618//25456834//27773535//27371828//27773536
chrX:53222250-53222251(-) m6A CDS//intron       24284625//24209618//25456834//28052920//27773535//27371828//27773536
chrX:53222266-53222267(-) m6A CDS//intron       24284625//24209618//25456834//28052920//27773535//27371828//27773536
chrX:53222327-53222328(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536
chrX:53222646-53222647(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chrX:53222657-53222658(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chrX:53222688-53222689(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536
chrX:53222715-53222716(-) m6A CDS       24284625//24209618//27773535//27371828//27773536
chrX:53222765-53222766(-) m6A CDS       24284625//24209618//27773535//27371828
chrX:53223007-53223008(-) m6A CDS       24284625//24981863//27773535//27371828
chrX:53223398-53223399(-) m6A CDS       24284625//24981863//27773535//27371828//27773536
chrX:53223404-53223405(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chrX:53223557-53223558(-) m6A CDS       24284625//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chrX:53223589-53223590(-) m6A CDS       24284625//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chrX:53223642-53223643(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chrX:53223738-53223739(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27773536//22575960
chrX:53223896-53223897(-) m6A CDS       24284625//27773535//27371828//22575960
chrX:53224125-53224126(-) m6A CDS       24284625//27773535//27371828//22575960
chrX:53224134-53224135(-) m6A CDS       24284625//27773535//27371828//22575960
chrX:53224218-53224219(-) m6A CDS       24284625//27773535//27371828//22575960
chrX:53224450-53224451(-) m6A CDS       24284625//27773535//27371828
chrX:53224505-53224506(-) m6A CDS       27773535
chrX:53224533-53224534(-) m6A CDS       27773535
chrX:53225185-53225186(-) m6A CDS       27773535//27773536//22575960
chrX:53225923-53225924(-) m6A CDS       24981863//28052920//27773535//27371828//27773536//22575960
chrX:53225992-53225993(-) m6A CDS       24981863//28052920//27773535//27371828//27773536//22575960
chrX:53226070-53226071(-) m6A CDS       24284625//27371828//27773536//22575960
chrX:53226214-53226215(-) m6A CDS       24284625
chrX:53226845-53226846(-) m6A exon//intron       24284625
chrX:53226850-53226851(-) m6A exon//intron       24284625
chrX:53226906-53226907(-) m6A exon//intron       27773535
chrX:53226914-53226915(-) m6A exon//intron       27773535
chrX:53226992-53226993(-) m6A CDS//exon       27773535
chrX:53227001-53227002(-) m6A CDS//exon       27773535
chrX:53231654-53231655(-) m6A exon//intron       27773535
chrX:53231671-53231672(-) m6A exon//intron       27773535
chrX:53231749-53231750(-) m6A exon//intron       27773535
chrX:53231771-53231772(-) m6A exon//intron       27773535
chrX:53231790-53231791(-) m6A exon//intron       27773535
chrX:53231948-53231949(-) m6A exon//intron       27773535
chrX:53239676-53239677(-) m6A CDS//exon       27773535
chrX:53239712-53239713(-) m6A CDS//exon       27773535
chrX:53239744-53239745(-) m6A CDS//exon       27773535
chrX:53240822-53240823(-) m6A CDS//exon       24981863
chrX:53244969-53244970(-) m6A exon//intron       26404942//27773535
chrX:53244995-53244996(-) m6A CDS//exon       24981863//26404942//27773535
chrX:53245030-53245031(-) m6A CDS//exon       24981863//26404942//27773535
chrX:53245071-53245072(-) m6A CDS//exon       24981863//26404942//27773535
chrX:53245257-53245258(-) Am CDS//exon       -
chrX:53245270-53245271(-) m6A CDS//exon       24981863//26404942//27773535
chrX:53245275-53245276(-) m6A CDS//exon       24981863//26404942//27773535
chrX:53245359-53245360(-) m6A CDS//exon       24981863//27773535
chrX:53245373-53245374(-) m6A CDS//exon       24981863//27773535
chrX:53246336-53246337(-) m6A CDS       24981863//27773535
chrX:53246408-53246409(-) m6A CDS       24981863//27773535
chrX:53246421-53246422(-) m6A CDS       24981863//27773535
chrX:53247107-53247108(-) m6A 3'UTR//CDS//exon       27773535
chrX:53250066-53250067(-) m6A 3'UTR//CDS//exon//intron       27773536
chrX:53250873-53250874(-) m6A 3'UTR//exon//intron       27773536
chrX:53253994-53253995(-) m6A CDS       27773536
chrX:53254084-53254085(-) m6A 5'UTR       27371828//27773536
chrX:53254142-53254143(-) m6A 5'UTR       27371828//27773536
chrX:53254239-53254240(-) m6A 5'UTR       24284625//24209618//24981863//27773535//27371828//27773536//22575960
chrX:53254383-53254384(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chrX:53254438-53254439(-) m6A 5'UTR       24284625//24981863//27773535
chrX:53254525-53254526(-) m6A 5'UTR       24981863//27773535
chrX:53254579-53254580(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate JARID1C
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: sars-cov-2-mir-D6-3p
Interactor2: JARID1C

Evidence Support:


Prediction-Evidence miRanda//miRDB//Targetscan
Support Database ViRBase

References:


PMID 33398248 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Cytotoxin and gene regulation associated genes targeted by SARS-CoV-2 encoded miRNAs.

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