Detail Information

Basic Information:


  VIRBase ID:  

VHID00706696

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol sars-cov-2-mir-D6-3p SP1
miRBase
Accession/Entrez ID		 sars-cov-2-mir-D6-3p 6667
Organism SARS-CoV-2 (NC_045512.2) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SP1
chr12:53783062(+) A-I      intronic
chr12:53779435(+) A-I      intronic
chr12:53788528(+) A-I      intronic
chr12:53788463(+) A-I      intronic
chr12:53780453(+) A-I      intronic
chr12:53787948(+) A-I      intronic
chr12:53795160(+) A-I      intronic
chr12:53779213(+) A-I      intronic
chr12:53779192(+) A-I      intronic
chr12:53787892(+) A-I      intronic
chr12:53787844(+) A-I      intronic
chr12:53780535(+) A-I      intronic
chr12:53783110(+) A-I      intronic
chr12:53794615(+) A-I      intronic
chr12:53794607(+) A-I      intronic
chr12:53787835(+) A-I      intronic
chr12:53778613(+) A-I      intronic
chr12:53787596(+) A-I      intronic
chr12:53780479(+) A-I      intronic
chr12:53787547(+) A-I      intronic
chr12:53787456(+) A-I      intronic
chr12:53787341(+) A-I      intronic
chr12:53787195(+) A-I      intronic
chr12:53783109(+) A-I      intronic
chr12:53782641(+) A-I      intronic
chr12:53782633(+) A-I      intronic
chr12:53782625(+) A-I      intronic
chr12:53786750(+) A-I      intronic
chr12:53786726(+) A-I      intronic
chr12:53786678(+) A-I      intronic
chr12:53778568(+) A-I      intronic
chr12:53786633(+) A-I      intronic
chr12:53782582(+) A-I      intronic
chr12:53780380(+) A-I      intronic
chr12:53794473(+) A-I      intronic
chr12:53794459(+) A-I      intronic
chr12:53792228(+) A-I      intronic
chr12:53791538(+) A-I      intronic
chr12:53786632(+) A-I      intronic
chr12:53791057(+) A-I      intronic
chr12:53790935(+) A-I      intronic
chr12:53790925(+) A-I      intronic
chr12:53790863(+) A-I      intronic
chr12:53789694(+) A-I      intronic
chr12:53783311(+) A-I      intronic
chr12:53789674(+) A-I      intronic
chr12:53779569(+) A-I      intronic
chr12:53778531(+) A-I      intronic
chr12:53804429(+) A-I      intronic
chr12:53789125(+) A-I      intronic
chr12:53783255(+) A-I      intronic
chr12:53781515(+) A-I      intronic
chr12:53780839(+) A-I      intronic
chr12:53789081(+) A-I      intronic
chr12:53779495(+) A-I      intronic
chr12:53780405(+) A-I      intronic
chr12:53799343(+) A-I      intronic
chr12:53788853(+) A-I      intronic
chr12:53780835(+) A-I      intronic
chr12:53799001(+) A-I      intronic
chr12:53798862(+) A-I      intronic
chr12:53798759(+) A-I      intronic
chr12:53798747(+) A-I      intronic
chr12:53783381(+) A-I      intronic
chr12:53798584(+) A-I      intronic
chr12:53797374(+) A-I      intronic
chr12:53790322(+) A-I      intronic
chr12:53797348(+) A-I      intronic
chr12:53783085(+) A-I      intronic
chr12:53781541(+) A-I      intronic
chr12:53788729(+) A-I      intronic
chr12:53797200(+) A-I      intronic
chr12:53796672(+) A-I      intronic
chr12:53788574(+) A-I      intronic
chr12:53780814(+) A-I      intronic
chr12:53796642(+) A-I      intronic
chr12:53796588(+) A-I      intronic
chr12:53796587(+) A-I      intronic
chr12:53796205(+) A-I      intronic
chr12:53796153(+) A-I      intronic
chr12:53795700(+) A-I      intronic
chr12:53795592(+) A-I      intronic
chr12:53795579(+) A-I      intronic
chr12:53795578(+) A-I      intronic
chr12:53795244(+) A-I      intronic
chr12:53798683(+) A-I      intronic
chr12:53796584(+) A-I      intronic
chr12:53799281(+) A-I      intronic
chr12:53778540(+) A-I      intronic
chr12:53801027(+) A-I      intronic
chr12:53798572(+) A-I      intronic
chr12:53788672(+) A-I      intronic
chr12:53790347(+) A-I      intronic
chr12:53798700(+) A-I      intronic
chr12:53802354(+) A-I      intronic
chr12:53787481(+) A-I      intronic
chr12:53786793(+) A-I      intronic
chr12:53786961(+) A-I      intronic
chr12:53797359(+) A-I      intronic
chr12:53783106(+) A-I      intronic
chr12:53789934(+) A-I      intronic
chr12:53790885(+) A-I      intronic
chr12:53803522(+) A-I      intronic
chr12:53794685(+) A-I      intronic
chr12:53788875(+) A-I      intronic
chr12:53778987(+) A-I      intronic
chr12:53787482(+) A-I      intronic
chr12:53799292(+) A-I      intronic
chr12:53796650(+) A-I      intronic
chr12:53796921(+) A-I      intronic
chr12:53780340(+) A-I      intronic
chr12:53787989(+) A-I      intronic
chr12:53795586(+) A-I      intronic
chr12:53800815(+) A-I      intronic
chr12:53790847(+) A-I      intronic
chr12:53778567(+) A-I      intronic
chr12:53795618(+) A-I      intronic
chr12:53792167(+) A-I      intronic
chr12:53797375(+) A-I      intronic
chr12:53782630(+) A-I      intronic
chr12:53798681(+) A-I      intronic
chr12:53788605(+) A-I      intronic
chr12:53795715(+) A-I      intronic
chr12:53783267(+) A-I      intronic
chr12:53781592(+) A-I      intronic
chr12:53791058(+) A-I      intronic
chr12:53778516(+) A-I      intronic
chr12:53799355(+) A-I      intronic
chr12:53803947(+) A-I      intronic
chr12:53795637(+) A-I      intronic
chr12:53789108(+) A-I      intronic
chr12:53786978(+) A-I      intronic
chr12:53790913(+) A-I      intronic
chr12:53786859(+) A-I      intronic
chr12:53802853(+) A-I      intronic
chr12:53784310(+) A-I      intronic
chr12:53798130(+) A-I      intronic
chr12:53779441(+) A-I      intronic
chr12:53797350(+) A-I      intronic
chr12:53787798(+) A-I      intronic
chr12:53790190(+) A-I      intronic
chr12:53796636(+) A-I      intronic
chr12:53788498(+) A-I      intronic
chr12:53804455(+) A-I      intronic
chr12:53801909(+) A-I      intronic
chr12:53796496(+) A-I      intronic
chr12:53797834(+) A-I      intronic
chr12:53800793(+) A-I      intronic
chr12:53804551(+) A-I      intronic
chr12:53796599(+) A-I      intronic
chr12:53782684(+) A-I      intronic
chr12:53801936(+) A-I      intronic
chr12:53798751(+) A-I      intronic
chr12:53796604(+) A-I      intronic
chr12:53787813(+) A-I      intronic
chr12:53797615(+) A-I      intronic
chr12:53788479(+) A-I      intronic
chr12:53788974(+) A-I      intronic
chr12:53788924(+) A-I      intronic
chr12:53804554(+) A-I      intronic
chr12:53787884(+) A-I      intronic
chr12:53792241(+) A-I      intronic
chr12:53798066(+) A-I      intronic
chr12:53791477(+) A-I      intronic
chr12:53784212(+) A-I      intronic
chr12:53778198(+) A-I      intronic
chr12:53780417(+) A-I      intronic
chr12:53797302(+) A-I      intronic
chr12:53796592(+) A-I      intronic
chr12:53798815(+) A-I      intronic
chr12:53799327(+) A-I      intronic
chr12:53801993(+) A-I      intronic
chr12:53778998(+) A-I      intronic
chr12:53794397(+) A-I      intronic
chr12:53788620(+) A-I      intronic
chr12:53781582(+) A-I      intronic
chr12:53795553(+) A-I      intronic
chr12:53797211(+) A-I      intronic
chr12:53787749(+) A-I      intronic
chr12:53784306(+) A-I      intronic
chr12:53779033(+) A-I      intronic
chr12:53797266(+) A-I      intronic
chr12:53800790(+) A-I      intronic
chr12:53793595(+) A-I      intronic
chr12:53778958(+) A-I      intronic
chr12:53803647(+) A-I      intronic
chr12:53786970(+) A-I      intronic
chr12:53796783(+) A-I      intronic
chr12:53778259(+) A-I      intronic
chr12:53801942(+) A-I      intronic
chr12:53787051(+) A-I      intronic
chr12:53787186(+) A-I      intronic
chr12:53778608(+) A-I      intronic
chr12:53800984(+) A-I      intronic
chr12:53799301(+) A-I      intronic
chr12:53798521(+) A-I      intronic
chr12:53787888(+) A-I      intronic
chr12:53801910(+) A-I      intronic
chr12:53780415(+) A-I      intronic
chr12:53798555(+) A-I      intronic
chr12:53786709(+) A-I      intronic
chr12:53790176(+) A-I      intronic
chr12:53797204(+) A-I      intronic
chr12:53793581(+) A-I      intronic
chr12:53799303(+) A-I      intronic
chr12:53786708(+) A-I      intronic
chr12:53787879(+) A-I      intronic
chr12:53787250(+) A-I      intronic
chr12:53794401(+) A-I      intronic
chr12:53797188(+) A-I      intronic
chr12:53798907(+) A-I      intronic
chr12:53791527(+) A-I      intronic
chr12:53800807(+) A-I      intronic
chr12:53796603(+) A-I      intronic
chr12:53788753(+) A-I      intronic
chr12:53787721(+) A-I      intronic
chr12:53798760(+) A-I      intronic
chr12:53790975(+) A-I      intronic
chr12:53799333(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SP1
chr12:53794416(+) C-T intron -    22484847
chr12:53799301(+) A-G intron -    22484847
chr12:53799303(+) A-G intron -    22484847
chr12:53799327(+) A-G intron -    22484847
chr12:53799333(+) A-G intron -    22484847
chr12:53778259(+) A-G intron -    22484847
chr12:53779441(+) A-G intron -    22484847
chr12:53780415(+) A-G intron -    22484847
chr12:53780417(+) A-G intron -    22484847
chr12:53783267(+) A-G intron -    22484847
chr12:53786708(+) A-G intron -    22484847
chr12:53786709(+) A-G intron -    22484847
chr12:53786859(+) A-G intron -    22484847
chr12:53786970(+) A-G intron -    22484847
chr12:53786978(+) A-G intron -    22484847
chr12:53787051(+) A-G intron -    22484847
chr12:53787145(+) C-T intron -    22484847
chr12:53787186(+) A-G intron -    22484847
chr12:53787250(+) A-G intron -    22484847
chr12:53787481(+) A-G intron -    22484847
chr12:53787482(+) A-G intron -    22484847
chr12:53787721(+) A-G intron -    22484847
chr12:53787798(+) A-G intron -    22484847
chr12:53787879(+) A-G intron -    22484847
chr12:53787884(+) A-G intron -    22484847
chr12:53787888(+) A-G intron -    22484847
chr12:53788479(+) A-G intron -    22484847
chr12:53788498(+) A-G intron -    22484847
chr12:53788620(+) A-G intron -    22484847
chr12:53788753(+) A-G intron -    22484847
chr12:53788875(+) A-G intron -    22484847
chr12:53788924(+) A-G intron -    22484847
chr12:53790347(+) A-G intron -    22484847
chr12:53790847(+) A-G intron -    22484847
chr12:53791527(+) A-G intron -    22484847
chr12:53792167(+) A-G intron -    22484847
chr12:53794401(+) A-G intron -    22484847
chr12:53794685(+) A-G intron -    22484847
chr12:53795553(+) A-G intron -    22484847
chr12:53795586(+) A-G intron -    22484847
chr12:53797188(+) A-G intron -    22484847
chr12:53797204(+) A-G intron -    22484847
chr12:53797834(+) A-G intron -    22484847
chr12:53798521(+) A-G intron -    22484847
chr12:53798555(+) A-G intron -    22484847
chr12:53798681(+) A-G intron -    22484847
chr12:53798751(+) A-G intron -    22484847
chr12:53798760(+) A-G intron -    22484847
chr12:53798815(+) A-G intron -    22484847
chr12:53799281(+) A-G intron -    22484847
chr12:53800807(+) A-G intron -    22484847
chr12:53800815(+) A-G intron -    22484847
chr12:53801910(+) A-G intron -    22484847
chr12:53803522(+) A-G intron -    22484847
chr12:53803647(+) A-G intron -    22484847
chr12:53803947(+) A-G intron -    22484847
chr12:53804455(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SP1
chr12:53775960-53775961(+) m6A CDS//intron       24284625//24981863
chr12:53775998-53775999(+) m6A CDS//intron       24284625//24981863
chr12:53776096-53776097(+) m6A CDS       24284625//24981863//22575960//22608085
chr12:53776200-53776201(+) m6A CDS       24284625//24981863//26404942//22608085
chr12:53776219-53776220(+) m6A CDS       24284625//24981863//26404942//22575960//22608085
chr12:53776271-53776272(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085
chr12:53776362-53776363(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr12:53776419-53776420(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr12:53776474-53776475(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr12:53776518-53776519(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr12:53776637-53776638(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr12:53776749-53776750(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22608085
chr12:53776775-53776776(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr12:53776793-53776794(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr12:53776836-53776837(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr12:53776848-53776849(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr12:53776853-53776854(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr12:53776902-53776903(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr12:53776910-53776911(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr12:53776957-53776958(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr12:53777000-53777001(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr12:53777030-53777031(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr12:53777040-53777041(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr12:53777064-53777065(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr12:53777087-53777088(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr12:53777110-53777111(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr12:53777126-53777127(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr12:53777142-53777143(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr12:53777157-53777158(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr12:53777171-53777172(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr12:53777213-53777214(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr12:53777321-53777322(+) m6A CDS       24284625//24209618//24981863
chr12:53803303-53803304(+) Cm CDS       -
chr12:53804774-53804775(+) m6A CDS       24284625//24981863//22608085
chr12:53804784-53804785(+) m6A CDS       24284625//24981863//22608085
chr12:53804845-53804846(+) m6A CDS       24284625//24981863//22575960//22608085
chr12:53805046-53805047(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22575960//22608085
chr12:53805100-53805101(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr12:53805226-53805227(+) m6A 3'UTR       24284625//24981863//22608085
chr12:53807326-53807327(+) m6A 3'UTR       26404942
chr12:53807339-53807340(+) m6A 3'UTR       26404942
chr12:53807429-53807430(+) m6A 3'UTR       26404942
chr12:53807436-53807437(+) m6A 3'UTR       26404942

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SP1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|HeLa-S3 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: sars-cov-2-mir-D6-3p
Interactor2: SP1

Evidence Support:


Prediction-Evidence miRanda//miRDB//Targetscan
Support Database ViRBase

References:


PMID 33398248 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Cytotoxin and gene regulation associated genes targeted by SARS-CoV-2 encoded miRNAs.

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