Detail Information

Basic Information:


  VIRBase ID:  

VHID00706694

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol sars-cov-2-mir-D6-3p MAPK7
miRBase
Accession/Entrez ID		 sars-cov-2-mir-D6-3p 5598
Organism SARS-CoV-2 (NC_045512.2) Homo sapiens
Category miRNA mRNA
Alias - BMK1//ERK4//ERK5//PRKM7

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MAPK7
chr17:19281144-19281145(+) m6A 5'UTR//exon       25456834
chr17:19281185-19281186(+) m6A 5'UTR//exon       25456834//24981863
chr17:19281282-19281283(+) m6A 5'UTR//exon       25456834//24981863
chr17:19281352-19281353(+) m6A 5'UTR//exon       25456834//24981863//27371828
chr17:19281368-19281369(+) m6A 5'UTR//exon       25456834//24981863//27371828
chr17:19281392-19281393(+) m6A 5'UTR//exon       25456834//24981863//27371828
chr17:19281808-19281809(+) m6A 5'UTR//exon//intron       25456834//24981863
chr17:19281851-19281852(+) m6A 5'UTR//exon//intron       24284625//25456834
chr17:19281876-19281877(+) m6A 5'UTR//exon//intron       24284625//25456834
chr17:19281914-19281915(+) m6A 5'UTR//exon//intron       24284625//25456834
chr17:19282208-19282209(+) m6A 5'UTR//exon//intron       24284625
chr17:19282284-19282285(+) m6A CDS//exon//intron       24284625
chr17:19282319-19282320(+) m6A CDS//exon//intron       -
chr17:19282741-19282742(+) m6A exon//intron       25456834
chr17:19282756-19282757(+) m6A exon//intron       25456834
chr17:19283191-19283192(+) m6A 3'UTR//CDS//exon//intron       24284625
chr17:19283217-19283218(+) m6A 3'UTR//CDS//exon//intron       24284625
chr17:19283289-19283290(+) m6A exon//intron       24284625
chr17:19283296-19283297(+) m6A exon//intron       24284625
chr17:19283389-19283390(+) m6A exon//intron       24284625//25456834//24981863
chr17:19283415-19283416(+) m6A exon//intron       24981863
chr17:19283494-19283495(+) m6A exon//intron       24981863
chr17:19283534-19283535(+) m6A exon//intron       24981863
chr17:19283555-19283556(+) m6A exon//intron       24981863
chr17:19283569-19283570(+) m6A exon//intron       24981863
chr17:19283576-19283577(+) m6A exon//intron       24981863
chr17:19283624-19283625(+) m6A exon//intron       24981863
chr17:19283649-19283650(+) m6A exon//intron       24981863
chr17:19283934-19283935(+) m6A 3'UTR//5'UTR//CDS//exon//intron       24284625//24981863//22575960
chr17:19283992-19283993(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//22575960//22608085
chr17:19284099-19284100(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:19284160-19284161(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr17:19284318-19284319(+) m6A CDS//exon//intron       24284625//24209618//24981863//22575960//22608085
chr17:19284452-19284453(+) m6A CDS//exon//intron       24284625//24209618//24981863
chr17:19284681-19284682(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr17:19284804-19284805(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr17:19284939-19284940(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863
chr17:19285034-19285035(+) m6A exon//intron       24284625//25456834//24981863
chr17:19285040-19285041(+) m6A exon//intron       24284625//24209618//25456834//24981863
chr17:19285046-19285047(+) m6A exon//intron       24284625//24209618//25456834//24981863
chr17:19285289-19285290(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr17:19285332-19285333(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr17:19286497-19286498(+) m6A CDS//exon       24981863
chr17:19286536-19286537(+) m6A CDS//exon       24981863
chr17:19286576-19286577(+) m6A 3'UTR//exon       24981863
chr17:19286624-19286625(+) m6A 3'UTR//exon       -
chr17:19286672-19286673(+) m6A 3'UTR//exon       24981863
chr17:19286733-19286734(+) m6A 3'UTR//exon       24981863
chr17:19286750-19286751(+) m6A 3'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MAPK7
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: sars-cov-2-mir-D6-3p
Interactor2: MAPK7

Evidence Support:


Prediction-Evidence miRanda//miRDB//Targetscan
Support Database ViRBase

References:


PMID 33398248 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Cytotoxin and gene regulation associated genes targeted by SARS-CoV-2 encoded miRNAs.

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