Detail Information

Basic Information:


  VIRBase ID:  

VHID00706689

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol sars-cov-2-mir-D6-3p IL15
miRBase
Accession/Entrez ID		 sars-cov-2-mir-D6-3p 3600
Organism SARS-CoV-2 (NC_045512.2) Homo sapiens
Category miRNA mRNA
Alias - IL-15

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR IL15
chr4:142604220(+) A-I      intronic
chr4:142587621(+) A-I      intronic
chr4:142587626(+) A-I      intronic
chr4:142604266(+) A-I      intronic
chr4:142603990(+) A-I      intronic
chr4:142603932(+) A-I      intronic
chr4:142587627(+) A-I      intronic
chr4:142604169(+) A-I      intronic
chr4:142604106(+) A-I      intronic
chr4:142587716(+) A-I      intronic
chr4:142595583(+) A-I      intronic
chr4:142595619(+) A-I      intronic
chr4:142595632(+) A-I      intronic
chr4:142599803(+) A-I      intronic
chr4:142599816(+) A-I      intronic
chr4:142599824(+) A-I      intronic
chr4:142599854(+) A-I      intronic
chr4:142599855(+) A-I      intronic
chr4:142599859(+) A-I      intronic
chr4:142599884(+) A-I      intronic
chr4:142603924(+) A-I      intronic
chr4:142604221(+) A-I      intronic
chr4:142600015(+) A-I      intronic
chr4:142588063(+) A-I      intronic
chr4:142588056(+) A-I      intronic
chr4:142584787(+) A-I      intronic
chr4:142584767(+) A-I      intronic
chr4:142584754(+) A-I      intronic
chr4:142584742(+) A-I      intronic
chr4:142584711(+) A-I      intronic
chr4:142584710(+) A-I      intronic
chr4:142604175(+) A-I      intronic
chr4:142621158(+) A-I      intronic
chr4:142604270(+) A-I      intronic
chr4:142637141(+) A-I      5'UTR
chr4:142637129(+) A-I      5'UTR
chr4:142637117(+) A-I      5'UTR
chr4:142621176(+) A-I      intronic
chr4:142587440(+) A-I      intronic
chr4:142603926(+) A-I      intronic
chr4:142587371(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED IL15
chr4:142584649(+) A-G intron -    22484847
chr4:142587857(+) A-G intron -    22484847
chr4:142587994(+) A-G intron -    22484847
chr4:142580402(+) C-T intron -    22484847
chr4:142580480(+) T-C intron -    22484847
chr4:142580633(+) C-A intron -    22484847
chr4:142587371(+) A-G intron -    22484847
chr4:142595608(+) A-C intron -    22484847
chr4:142595628(+) A-G intron -    22484847
chr4:142599787(+) A-G intron -    22484847
chr4:142603922(+) A-G intron -    22484847
chr4:142603926(+) A-G intron -    22484847
chr4:142604231(+) A-G intron -    22484847
chr4:142607353(+) G-C intron -    22484847
chr4:142607392(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase IL15
chr4:142558059-142558060(+) m6A 5'UTR//intron       24981863
chr4:142654070-142654071(+) m6A 3'UTR       24981863//27773535
chr4:142654099-142654100(+) m6A 3'UTR       24981863//27773535
chr4:142654128-142654129(+) m6A 3'UTR       24981863//27773535
chr4:142654144-142654145(+) m6A 3'UTR       24981863//27773535
chr4:142654196-142654197(+) m6A 3'UTR       24981863//27773535
chr4:142654207-142654208(+) m6A 3'UTR       24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate IL15
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: sars-cov-2-mir-D6-3p
Interactor2: IL15

Evidence Support:


Prediction-Evidence miRanda//miRDB//Targetscan
Support Database ViRBase

References:


PMID 33398248 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Cytotoxin and gene regulation associated genes targeted by SARS-CoV-2 encoded miRNAs.

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