Detail Information

Basic Information:


  VIRBase ID:  

VHID00706686

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol sars-cov-2-mir-D6-3p IL8
miRBase
Accession/Entrez ID		 sars-cov-2-mir-D6-3p 3576
Organism SARS-CoV-2 (NC_045512.2) Homo sapiens
Category miRNA mRNA
Alias - GCP-1//GCP1//IL8//LECT//LUCT//LYNAP//MDNCF//MONAP//NAF//NAP-1//NAP1//SCYB8

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase IL8
chr4:74606289-74606290(+) m6A 5'UTR//exon       24981863//26404942
chr4:74606299-74606300(+) m6A 5'UTR//exon       24981863//26404942
chr4:74606324-74606325(+) m6A 5'UTR//exon       24981863//26404942//27773535
chr4:74606341-74606342(+) m6A 5'UTR//exon       24981863//26404942//27773535
chr4:74606354-74606355(+) m6A 5'UTR//exon       24981863//26404942//27773535
chr4:74606373-74606374(+) m6A 5'UTR//exon       24981863//26404942//27773535
chr4:74607286-74607287(+) m6A CDS//exon       27773535
chr4:74607308-74607309(+) m6A CDS//exon       27773535
chr4:74607319-74607320(+) m6A CDS//exon       26404942//27773535
chr4:74607346-74607347(+) m6A CDS//exon       26404942//27773535
chr4:74607367-74607368(+) m6A CDS//exon       26404942//27773535
chr4:74607434-74607435(+) m6A exon//intron       26404942
chr4:74608331-74608332(+) m6A 3'UTR       27773535
chr4:74608370-74608371(+) m6A 3'UTR       27773535
chr4:74608413-74608414(+) m6A 3'UTR       27773535
chr4:74608510-74608511(+) m6A 3'UTR       26404942//27773535
chr4:74608579-74608580(+) m6A 3'UTR       26404942//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate IL8
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: sars-cov-2-mir-D6-3p
Interactor2: IL8

Evidence Support:


Prediction-Evidence miRanda//miRDB//Targetscan
Support Database ViRBase

References:


PMID 33398248 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Cytotoxin and gene regulation associated genes targeted by SARS-CoV-2 encoded miRNAs.

Starting a new search, please wait ...