Detail Information

Basic Information:


  VIRBase ID:  

VHID00706680

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol sars-cov-2-mir-D4-5p MAPK6
miRBase
Accession/Entrez ID		 sars-cov-2-mir-D4-5p 5597
Organism SARS-CoV-2 (NC_045512.2) Homo sapiens
Category miRNA mRNA
Alias - ERK3//HsT17250//p97MAPK//PRKM6

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MAPK6
chr15:52315075(+) A-I      intronic
chr15:52345373(+) A-I      intronic
chr15:52323866(+) A-I      intronic
chr15:52323874(+) A-I      intronic
chr15:52315095(+) A-I      intronic
chr15:52315099(+) A-I      intronic
chr15:52315087(+) A-I      intronic
chr15:52319094(+) A-I      intronic
chr15:52349822(+) A-I      intronic
chr15:52327742(+) A-I      intronic
chr15:52345363(+) A-I      intronic
chr15:52347409(+) A-I      intronic
chr15:52347852(+) A-I      intronic
chr15:52343394(+) A-I      intronic
chr15:52347854(+) A-I      intronic
chr15:52315100(+) A-I      intronic
chr15:52319086(+) A-I      intronic
chr15:52335261(+) A-I      intronic
chr15:52319032(+) A-I      intronic
chr15:52347142(+) A-I      intronic
chr15:52316778(+) A-I      intronic
chr15:52346407(+) A-I      intronic
chr15:52315173(+) A-I      intronic
chr15:52346381(+) A-I      intronic
chr15:52331335(+) A-I      intronic
chr15:52319172(+) A-I      intronic
chr15:52319033(+) A-I      intronic
chr15:52345547(+) A-I      intronic
chr15:52314694(+) A-I      intronic
chr15:52341705(+) A-I      intronic
chr15:52335165(+) A-I      intronic
chr15:52327678(+) A-I      intronic
chr15:52314719(+) A-I      intronic
chr15:52315883(+) A-I      intronic
chr15:52315909(+) A-I      intronic
chr15:52315948(+) A-I      intronic
chr15:52316659(+) A-I      intronic
chr15:52327622(+) A-I      intronic
chr15:52316662(+) A-I      intronic
chr15:52316672(+) A-I      intronic
chr15:52316678(+) A-I      intronic
chr15:52316877(+) A-I      intronic
chr15:52323391(+) A-I      intronic
chr15:52323950(+) A-I      intronic
chr15:52317967(+) A-I      intronic
chr15:52318614(+) A-I      intronic
chr15:52318618(+) A-I      intronic
chr15:52318628(+) A-I      intronic
chr15:52318650(+) A-I      intronic
chr15:52343436(+) A-I      intronic
chr15:52319020(+) A-I      intronic
chr15:52319090(+) A-I      intronic
chr15:52319136(+) A-I      intronic
chr15:52319295(+) A-I      intronic
chr15:52319301(+) A-I      intronic
chr15:52319378(+) A-I      intronic
chr15:52319436(+) A-I      intronic
chr15:52319455(+) A-I      intronic
chr15:52319456(+) A-I      intronic
chr15:52319468(+) A-I      intronic
chr15:52319488(+) A-I      intronic
chr15:52320519(+) A-I      intronic
chr15:52321384(+) A-I      intronic
chr15:52321387(+) A-I      intronic
chr15:52323772(+) A-I      intronic
chr15:52346405(+) A-I      intronic
chr15:52323778(+) A-I      intronic
chr15:52323794(+) A-I      intronic
chr15:52324178(+) A-I      intronic
chr15:52324332(+) A-I      intronic
chr15:52324345(+) A-I      intronic
chr15:52325000(+) A-I      intronic
chr15:52325011(+) A-I      intronic
chr15:52325102(+) A-I      intronic
chr15:52326914(+) A-I      intronic
chr15:52327020(+) A-I      intronic
chr15:52327047(+) A-I      intronic
chr15:52327151(+) A-I      intronic
chr15:52319390(+) A-I      intronic
chr15:52327665(+) A-I      intronic
chr15:52336112(+) A-I      intronic
chr15:52316629(+) A-I      intronic
chr15:52327674(+) A-I      intronic
chr15:52327700(+) A-I      intronic
chr15:52327710(+) A-I      intronic
chr15:52327730(+) A-I      intronic
chr15:52347498(+) A-I      intronic
chr15:52346350(+) A-I      intronic
chr15:52318993(+) A-I      intronic
chr15:52333450(+) A-I      intronic
chr15:52333546(+) A-I      intronic
chr15:52333555(+) A-I      intronic
chr15:52329261(+) A-I      intronic
chr15:52335137(+) A-I      intronic
chr15:52335170(+) A-I      intronic
chr15:52335178(+) A-I      intronic
chr15:52335249(+) A-I      intronic
chr15:52347447(+) A-I      intronic
chr15:52335574(+) A-I      intronic
chr15:52335636(+) A-I      intronic
chr15:52354949(+) A-I      intronic
chr15:52339607(+) A-I      intronic
chr15:52339669(+) A-I      intronic
chr15:52321364(+) A-I      intronic
chr15:52339719(+) A-I      intronic
chr15:52340464(+) A-I      intronic
chr15:52340554(+) A-I      intronic
chr15:52340593(+) A-I      intronic
chr15:52340663(+) A-I      intronic
chr15:52340654(+) A-I      intronic
chr15:52340664(+) A-I      intronic
chr15:52340694(+) A-I      intronic
chr15:52340755(+) A-I      intronic
chr15:52340982(+) A-I      intronic
chr15:52341001(+) A-I      intronic
chr15:52341764(+) A-I      intronic
chr15:52341876(+) A-I      intronic
chr15:52342057(+) A-I      intronic
chr15:52342070(+) A-I      intronic
chr15:52342071(+) A-I      intronic
chr15:52342073(+) A-I      intronic
chr15:52345916(+) A-I      intronic
chr15:52343384(+) A-I      intronic
chr15:52343468(+) A-I      intronic
chr15:52318568(+) A-I      intronic
chr15:52343516(+) A-I      intronic
chr15:52343895(+) A-I      intronic
chr15:52343911(+) A-I      intronic
chr15:52343950(+) A-I      intronic
chr15:52343951(+) A-I      intronic
chr15:52346403(+) A-I      intronic
chr15:52345954(+) A-I      intronic
chr15:52345982(+) A-I      intronic
chr15:52346355(+) A-I      intronic
chr15:52327576(+) A-I      intronic
chr15:52346414(+) A-I      intronic
chr15:52346418(+) A-I      intronic
chr15:52346438(+) A-I      intronic
chr15:52346442(+) A-I      intronic
chr15:52346467(+) A-I      intronic
chr15:52346474(+) A-I      intronic
chr15:52346477(+) A-I      intronic
chr15:52347078(+) A-I      intronic
chr15:52347111(+) A-I      intronic
chr15:52347146(+) A-I      intronic
chr15:52347197(+) A-I      intronic
chr15:52347350(+) A-I      intronic
chr15:52347524(+) A-I      intronic
chr15:52347793(+) A-I      intronic
chr15:52347830(+) A-I      intronic
chr15:52347905(+) A-I      intronic
chr15:52349845(+) A-I      intronic
chr15:52349846(+) A-I      intronic
chr15:52349871(+) A-I      intronic
chr15:52352329(+) A-I      intronic
chr15:52354304(+) A-I      intronic
chr15:52354707(+) A-I      intronic
chr15:52354877(+) A-I      intronic
chr15:52335284(+) A-I      intronic
chr15:52331792(+) A-I      intronic
chr15:52323750(+) A-I      intronic
chr15:52320087(+) A-I      intronic
chr15:52322898(+) A-I      intronic
chr15:52347402(+) A-I      intronic
chr15:52349842(+) A-I      intronic
chr15:52346336(+) A-I      intronic
chr15:52345349(+) A-I      intronic
chr15:52346011(+) A-I      intronic
chr15:52339672(+) A-I      intronic
chr15:52320013(+) A-I      intronic
chr15:52315082(+) A-I      intronic
chr15:52340405(+) A-I      intronic
chr15:52347343(+) A-I      intronic
chr15:52347537(+) A-I      intronic
chr15:52340659(+) A-I      intronic
chr15:52335521(+) A-I      intronic
chr15:52341651(+) A-I      intronic
chr15:52349801(+) A-I      intronic
chr15:52346020(+) A-I      intronic
chr15:52327577(+) A-I      intronic
chr15:52335270(+) A-I      intronic
chr15:52336153(+) A-I      intronic
chr15:52355529(+) A-I      intronic
chr15:52322888(+) A-I      intronic
chr15:52323918(+) A-I      intronic
chr15:52347251(+) A-I      intronic
chr15:52315044(+) A-I      intronic
chr15:52341772(+) A-I      intronic
chr15:52346337(+) A-I      intronic
chr15:52324151(+) A-I      intronic
chr15:52321309(+) A-I      intronic
chr15:52347543(+) A-I      intronic
chr15:52346404(+) A-I      intronic
chr15:52343430(+) A-I      intronic
chr15:52319481(+) A-I      intronic
chr15:52319334(+) A-I      intronic
chr15:52323867(+) A-I      intronic
chr15:52318655(+) A-I      intronic
chr15:52347451(+) A-I      intronic
chr15:52346310(+) A-I      intronic
chr15:52319457(+) A-I      intronic
chr15:52355297(+) A-I      intronic
chr15:52335139(+) A-I      intronic
chr15:52323766(+) A-I      intronic
chr15:52319120(+) A-I      intronic
chr15:52324253(+) A-I      intronic
chr15:52325144(+) A-I      intronic
chr15:52318671(+) A-I      intronic
chr15:52343519(+) A-I      intronic
chr15:52315053(+) A-I      intronic
chr15:52319095(+) A-I      intronic
chr15:52323180(+) A-I      intronic
chr15:52315157(+) A-I      intronic
chr15:52318994(+) A-I      intronic
chr15:52323972(+) A-I      intronic
chr15:52319159(+) A-I      intronic
chr15:52319373(+) A-I      intronic
chr15:52336175(+) A-I      intronic
chr15:52323773(+) A-I      intronic
chr15:52319413(+) A-I      intronic
chr15:52335588(+) A-I      intronic
chr15:52347041(+) A-I      intronic
chr15:52315052(+) A-I      intronic
chr15:52347782(+) A-I      intronic
chr15:52335575(+) A-I      intronic
chr15:52314481(+) A-I      intronic
chr15:52317873(+) A-I      intronic
chr15:52319371(+) A-I      intronic
chr15:52349936(+) A-I      intronic
chr15:52324982(+) A-I      intronic
chr15:52319870(+) A-I      intronic
chr15:52343294(+) A-I      intronic
chr15:52335145(+) A-I      intronic
chr15:52315958(+) A-I      intronic
chr15:52331782(+) A-I      intronic
chr15:52346309(+) A-I      intronic
chr15:52323837(+) A-I      intronic
chr15:52340969(+) A-I      intronic
chr15:52340884(+) A-I      intronic
chr15:52343885(+) A-I      intronic
chr15:52326964(+) A-I      intronic
chr15:52323827(+) A-I      intronic
chr15:52326921(+) A-I      intronic
chr15:52340871(+) A-I      intronic
chr15:52345371(+) A-I      intronic
chr15:52314259(+) A-I      intronic
chr15:52320069(+) A-I      intronic
chr15:52349881(+) A-I      intronic
chr15:52315144(+) A-I      intronic
chr15:52345937(+) A-I      intronic
chr15:52317301(+) A-I      intronic
chr15:52347186(+) A-I      intronic
chr15:52316989(+) A-I      intronic
chr15:52323211(+) A-I      intronic
chr15:52354291(+) A-I      intronic
chr15:52323171(+) A-I      intronic
chr15:52324247(+) A-I      intronic
chr15:52347064(+) A-I      intronic
chr15:52335292(+) A-I      intronic
chr15:52319100(+) A-I      intronic
chr15:52347423(+) A-I      intronic
chr15:52319353(+) A-I      intronic
chr15:52314668(+) A-I      intronic
chr15:52335163(+) A-I      intronic
chr15:52347065(+) A-I      intronic
chr15:52345940(+) A-I      intronic
chr15:52319158(+) A-I      intronic
chr15:52347110(+) A-I      intronic
chr15:52316001(+) A-I      intronic
chr15:52353825(+) A-I      intronic
chr15:52331861(+) A-I      intronic
chr15:52335144(+) A-I      intronic
chr15:52349922(+) A-I      intronic
chr15:52347443(+) A-I      intronic
chr15:52327690(+) A-I      intronic
chr15:52341873(+) A-I      intronic
chr15:52335200(+) A-I      intronic
chr15:52323985(+) A-I      intronic
chr15:52327750(+) A-I      intronic
chr15:52346096(+) A-I      intronic
chr15:52343461(+) A-I      intronic
chr15:52347860(+) A-I      intronic
chr15:52354855(+) A-I      intronic
chr15:52354296(+) A-I      intronic
chr15:52323878(+) A-I      intronic
chr15:52319426(+) A-I      intronic
chr15:52316781(+) A-I      intronic
chr15:52345293(+) A-I      intronic
chr15:52327617(+) A-I      intronic
chr15:52323826(+) A-I      intronic
chr15:52347497(+) A-I      intronic
chr15:52317000(+) A-I      intronic
chr15:52316715(+) A-I      intronic
chr15:52346017(+) A-I      intronic
chr15:52323265(+) A-I      intronic
chr15:52324976(+) A-I      intronic
chr15:52327762(+) A-I      intronic
chr15:52340897(+) A-I      intronic
chr15:52317833(+) A-I      intronic
chr15:52323128(+) A-I      intronic
chr15:52317972(+) A-I      intronic
chr15:52314477(+) A-I      intronic
chr15:52331948(+) A-I      intronic
chr15:52323141(+) A-I      intronic
chr15:52354841(+) A-I      intronic
chr15:52347896(+) A-I      intronic
chr15:52353831(+) A-I      intronic
chr15:52318654(+) A-I      intronic
chr15:52335650(+) A-I      intronic
chr15:52349867(+) A-I      intronic
chr15:52323134(+) A-I      intronic
chr15:52316827(+) A-I      intronic
chr15:52335675(+) A-I      intronic
chr15:52319093(+) A-I      intronic
chr15:52335669(+) A-I      intronic
chr15:52326975(+) A-I      intronic
chr15:52314538(+) A-I      intronic
chr15:52343846(+) A-I      intronic
chr15:52319418(+) A-I      intronic
chr15:52314288(+) A-I      intronic
chr15:52354733(+) A-I      intronic
chr15:52317020(+) A-I      intronic
chr15:52350278(+) A-I      intronic
chr15:52323863(+) A-I      intronic
chr15:52354346(+) A-I      intronic
chr15:52340561(+) A-I      intronic
chr15:52315831(+) A-I      intronic
chr15:52333627(+) A-I      intronic
chr15:52323350(+) A-I      intronic
chr15:52316990(+) A-I      intronic
chr15:52317807(+) A-I      intronic
chr15:52343515(+) A-I      intronic
chr15:52325134(+) A-I      intronic
chr15:52315104(+) A-I      intronic
chr15:52314733(+) A-I      intronic
chr15:52346400(+) A-I      intronic
chr15:52329312(+) A-I      intronic
chr15:52354313(+) A-I      intronic
chr15:52354752(+) A-I      intronic
chr15:52345941(+) A-I      intronic
chr15:52317911(+) A-I      intronic
chr15:52327771(+) A-I      intronic
chr15:52316646(+) A-I      intronic
chr15:52335581(+) A-I      intronic
chr15:52347915(+) A-I      intronic
chr15:52339682(+) A-I      intronic
chr15:52331865(+) A-I      intronic
chr15:52320001(+) A-I      intronic
chr15:52319037(+) A-I      intronic
chr15:52333655(+) A-I      intronic
chr15:52346303(+) A-I      intronic
chr15:52336147(+) A-I      intronic
chr15:52340639(+) A-I      intronic
chr15:52336012(+) A-I      intronic
chr15:52319296(+) A-I      intronic
chr15:52318763(+) A-I      intronic
chr15:52340416(+) A-I      intronic
chr15:52323125(+) A-I      intronic
chr15:52353957(+) A-I      intronic
chr15:52345890(+) A-I      intronic
chr15:52343924(+) A-I      intronic
chr15:52331982(+) A-I      intronic
chr15:52320063(+) A-I      intronic
chr15:52343497(+) A-I      intronic
chr15:52319096(+) A-I      intronic
chr15:52327741(+) A-I      intronic
chr15:52319234(+) A-I      intronic
chr15:52314610(+) A-I      intronic
chr15:52324333(+) A-I      intronic
chr15:52314597(+) A-I      intronic
chr15:52331460(+) A-I      intronic
chr15:52314557(+) A-I      intronic
chr15:52335254(+) A-I      intronic
chr15:52317838(+) A-I      intronic
chr15:52326972(+) A-I      intronic
chr15:52326236(+) A-I      intronic
chr15:52333480(+) A-I      intronic
chr15:52340693(+) A-I      intronic
chr15:52315902(+) A-I      intronic
chr15:52326771(+) A-I      intronic
chr15:52316803(+) A-I      intronic
chr15:52315184(+) A-I      intronic
chr15:52353949(+) A-I      intronic
chr15:52347395(+) A-I      intronic
chr15:52314266(+) A-I      intronic
chr15:52353857(+) A-I      intronic
chr15:52349790(+) A-I      intronic
chr15:52341938(+) A-I      intronic
chr15:52329221(+) A-I      intronic
chr15:52331196(+) A-I      intronic
chr15:52318660(+) A-I      intronic
chr15:52315895(+) A-I      intronic
chr15:52318686(+) A-I      intronic
chr15:52329371(+) A-I      intronic
chr15:52323877(+) A-I      intronic
chr15:52347327(+) A-I      intronic
chr15:52323404(+) A-I      intronic
chr15:52318545(+) A-I      intronic
chr15:52317973(+) A-I      intronic
chr15:52347130(+) A-I      intronic
chr15:52319427(+) A-I      intronic
chr15:52347150(+) A-I      intronic
chr15:52327668(+) A-I      intronic
chr15:52354803(+) A-I      intronic
chr15:52341937(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED MAPK6
chr15:52338165(+) G-A exon 5'UTR    21725310
chr15:52314259(+) A-G intron -    22484847
chr15:52320063(+) A-G intron -    22484847
chr15:52320069(+) A-G intron -    22484847
chr15:52323393(+) G-A intron -    22484847
chr15:52327622(+) A-G intron -    22484847
chr15:52329312(+) A-G intron -    22484847
chr15:52331460(+) A-G intron -    22484847
chr15:52331782(+) A-G intron -    22484847
chr15:52331792(+) A-G intron -    22484847
chr15:52331861(+) A-G intron -    22484847
chr15:52335139(+) A-G intron -    22484847
chr15:52335200(+) A-G intron -    22484847
chr15:52335588(+) A-G intron -    22484847
chr15:52341651(+) A-G intron -    22484847
chr15:52341705(+) A-G intron -    22484847
chr15:52347343(+) A-G intron -    22484847
chr15:52347782(+) A-G intron -    22484847
chr15:52349922(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MAPK6
chr15:52311509-52311510(+) m6A 5'UTR//exon//intron       -
chr15:52334987-52334988(+) m6A exon//intron       24981863
chr15:52338102-52338103(+) m6A 5'UTR//exon       24284625//24981863//22608085
chr15:52338224-52338225(+) m6A 5'UTR//exon       24284625//22608085
chr15:52338417-52338418(+) m6A 5'UTR//exon       24284625//24981863//22608085
chr15:52338486-52338487(+) m6A 5'UTR//exon       24284625//24209618//24981863//22608085
chr15:52338517-52338518(+) m6A 5'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr15:52338527-52338528(+) m6A 5'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr15:52338685-52338686(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr15:52338721-52338722(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr15:52338728-52338729(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr15:52338772-52338773(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr15:52338836-52338837(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr15:52338869-52338870(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr15:52338956-52338957(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr15:52338961-52338962(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr15:52338993-52338994(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr15:52339118-52339119(+) m6A CDS       24284625//24981863//22608085
chr15:52339147-52339148(+) m6A CDS       22608085
chr15:52356328-52356329(+) m6A CDS       27773535
chr15:52356437-52356438(+) m6A CDS       27773535
chr15:52356473-52356474(+) m6A CDS       27773535
chr15:52356752-52356753(+) m6A CDS       27773535
chr15:52356811-52356812(+) m6A CDS       27773535
chr15:52356838-52356839(+) m6A CDS       27773535
chr15:52356881-52356882(+) m6A CDS       27773535
chr15:52356898-52356899(+) m6A CDS       24981863//27773535
chr15:52356919-52356920(+) m6A CDS       24981863//27773535
chr15:52356960-52356961(+) m6A CDS       24981863//27773535
chr15:52356998-52356999(+) m6A CDS       24981863//27773535
chr15:52357018-52357019(+) m6A CDS       24981863//27773535
chr15:52357164-52357165(+) m6A CDS       24981863
chr15:52357184-52357185(+) m6A CDS       24981863
chr15:52357192-52357193(+) m6A CDS       24981863
chr15:52357198-52357199(+) m6A 3'UTR       24981863
chr15:52357209-52357210(+) m6A 3'UTR       24981863
chr15:52357626-52357627(+) m6A 3'UTR       27773535
chr15:52357714-52357715(+) m6A 3'UTR       27773535
chr15:52358183-52358184(+) m6A 3'UTR       27773535
chr15:52358194-52358195(+) m6A 3'UTR       27773535
chr15:52358258-52358259(+) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MAPK6
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: sars-cov-2-mir-D4-5p
Interactor2: MAPK6

Evidence Support:


Prediction-Evidence miRanda//miRDB//Targetscan
Support Database ViRBase

References:


PMID 33398248 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Cytotoxin and gene regulation associated genes targeted by SARS-CoV-2 encoded miRNAs.

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