Detail Information

Basic Information:


  VIRBase ID:  

VHID00706639

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol sars-cov-2-mir-D10-5p SOCS1
miRBase
Accession/Entrez ID		 sars-cov-2-mir-D10-5p 8651
Organism SARS-CoV-2 (NC_045512.2) Homo sapiens
Category miRNA mRNA
Alias - CIS1//CISH1//JAB//SOCS-1//SSI-1//SSI1//TIP-3//TIP3

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SOCS1
chr16:11348384-11348385(-) m6A 3'UTR       24981863
chr16:11348436-11348437(-) m6A 3'UTR       24981863
chr16:11348442-11348443(-) m6A 3'UTR       24981863
chr16:11348537-11348538(-) m6A 3'UTR       24209618
chr16:11348630-11348631(-) m6A 3'UTR       24209618//24981863
chr16:11348766-11348767(-) m6A CDS       24209618//24981863
chr16:11348969-11348970(-) m6A CDS       24209618//25456834//24981863//28052920//27371828
chr16:11349006-11349007(-) m6A CDS       24209618//25456834//24981863//28052920//27371828
chr16:11349263-11349264(-) m6A CDS       24209618//28052920//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SOCS1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: sars-cov-2-mir-D10-5p
Interactor2: SOCS1

Evidence Support:


Prediction-Evidence miRanda//miRDB//Targetscan
Support Database ViRBase

References:


PMID 33398248 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Cytotoxin and gene regulation associated genes targeted by SARS-CoV-2 encoded miRNAs.

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