Detail Information

Basic Information:


  VIRBase ID:  

VHID00706638

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol sars-cov-2-mir-D10-5p SUMO1
miRBase
Accession/Entrez ID		 sars-cov-2-mir-D10-5p 7341
Organism SARS-CoV-2 (NC_045512.2) Homo sapiens
Category miRNA mRNA
Alias - DAP1//GMP1//OFC10//PIC1//SENP2//SMT3//SMT3C//SMT3H3//UBL1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SUMO1
chr2:203072620(-) A-I      NonSyn:Ile->Val
chr2:203072610(-) A-I      NonSyn:Lys->Arg
chr2:203072608(-) A-I      NonSyn:Asn->Asp
chr2:203072645(-) A-I      Syn:Pro->Pro
chr2:203072633(-) A-I      Syn:Thr->Thr
chr2:203087735(-) A-I      intronic
chr2:203087780(-) A-I      intronic
chr2:203072627(-) A-I      Syn:Arg->Arg
chr2:203087750(-) A-I      intronic
chr2:203072723(-) A-I      Syn:Ala->Ala
chr2:203087731(-) A-I      intronic
chr2:203087765(-) A-I      intronic
chr2:203087741(-) A-I      intronic
chr2:203072468(-) A-I      intronic
chr2:203088248(-) A-I      intronic
chr2:203088852(-) A-I      intronic
chr2:203088853(-) A-I      intronic
chr2:203084384(-) A-I      intronic
chr2:203088099(-) A-I      intronic
chr2:203088176(-) A-I      intronic
chr2:203088187(-) A-I      intronic
chr2:203077711(-) A-I      intronic
chr2:203077726(-) A-I      intronic
chr2:203077742(-) A-I      intronic
chr2:203077848(-) A-I      intronic
chr2:203078048(-) A-I      intronic
chr2:203078167(-) A-I      intronic
chr2:203078191(-) A-I      intronic
chr2:203088210(-) A-I      intronic
chr2:203088213(-) A-I      intronic
chr2:203088218(-) A-I      intronic
chr2:203088222(-) A-I      intronic
chr2:203088239(-) A-I      intronic
chr2:203078594(-) A-I      intronic
chr2:203078515(-) A-I      intronic
chr2:203078509(-) A-I      intronic
chr2:203078506(-) A-I      intronic
chr2:203078196(-) A-I      intronic
chr2:203078480(-) A-I      intronic
chr2:203088999(-) A-I      intronic
chr2:203089451(-) A-I      intronic
chr2:203089690(-) A-I      intronic
chr2:203099461(-) A-I      intronic
chr2:203093847(-) A-I      intronic
chr2:203092852(-) A-I      intronic
chr2:203079851(-) A-I      intronic
chr2:203079864(-) A-I      intronic
chr2:203080494(-) A-I      intronic
chr2:203091754(-) A-I      intronic
chr2:203092820(-) A-I      intronic
chr2:203100715(-) A-I      intronic
chr2:203092816(-) A-I      intronic
chr2:203089726(-) A-I      intronic
chr2:203090133(-) A-I      intronic
chr2:203090161(-) A-I      intronic
chr2:203090189(-) A-I      intronic
chr2:203091620(-) A-I      intronic
chr2:203091753(-) A-I      intronic
chr2:203092797(-) A-I      intronic
chr2:203092739(-) A-I      intronic
chr2:203092721(-) A-I      intronic
chr2:203092220(-) A-I      intronic
chr2:203092095(-) A-I      intronic
chr2:203092091(-) A-I      intronic
chr2:203091780(-) A-I      intronic
chr2:203091763(-) A-I      intronic
chr2:203072461(-) A-I      intronic
chr2:203073028(-) A-I      intronic
chr2:203073909(-) A-I      intronic
chr2:203074075(-) A-I      intronic
chr2:203074709(-) A-I      intronic
chr2:203074725(-) A-I      intronic
chr2:203076509(-) A-I      intronic
chr2:203076526(-) A-I      intronic
chr2:203076583(-) A-I      intronic
chr2:203076648(-) A-I      intronic
chr2:203076764(-) A-I      intronic
chr2:203076771(-) A-I      intronic
chr2:203081542(-) A-I      intronic
chr2:203076846(-) A-I      intronic
chr2:203081731(-) A-I      intronic
chr2:203084140(-) A-I      intronic
chr2:203084238(-) A-I      intronic
chr2:203099868(-) A-I      intronic
chr2:203100630(-) A-I      intronic
chr2:203100631(-) A-I      intronic
chr2:203100701(-) A-I      intronic
chr2:203100703(-) A-I      intronic
chr2:203100706(-) A-I      intronic
chr2:203100709(-) A-I      intronic
chr2:203100710(-) A-I      intronic
chr2:203100711(-) A-I      intronic
chr2:203100781(-) A-I      intronic
chr2:203100782(-) A-I      intronic
chr2:203100787(-) A-I      intronic
chr2:203100820(-) A-I      intronic
chr2:203101969(-) A-I      intronic
chr2:203102037(-) A-I      intronic
chr2:203072635(-) A-I      NonSyn:Thr->Ala
chr2:203072650(-) A-I      NonSyn:Arg->Gly
chr2:203072626(-) A-I      NonSyn:Asn->Asp
chr2:203072596(-) A-I      NonSyn:Ser->Gly
chr2:203099137(-) A-I      intronic
chr2:203077097(-) A-I      intronic
chr2:203077086(-) A-I      intronic
chr2:203078159(-) A-I      intronic
chr2:203077064(-) A-I      intronic
chr2:203102001(-) A-I      intronic
chr2:203081632(-) A-I      intronic
chr2:203091710(-) A-I      intronic
chr2:203087669(-) A-I      intronic
chr2:203089383(-) A-I      intronic
chr2:203074281(-) A-I      intronic
chr2:203092158(-) A-I      intronic
chr2:203099772(-) A-I      intronic
chr2:203099468(-) A-I      intronic
chr2:203100504(-) A-I      intronic
chr2:203100393(-) A-I      intronic
chr2:203073888(-) A-I      intronic
chr2:203088163(-) A-I      intronic
chr2:203097288(-) A-I      intronic
chr2:203099411(-) A-I      intronic
chr2:203078101(-) A-I      intronic
chr2:203100425(-) A-I      intronic
chr2:203090104(-) A-I      intronic
chr2:203081622(-) A-I      intronic
chr2:203100606(-) A-I      intronic
chr2:203093903(-) A-I      intronic
chr2:203093295(-) A-I      intronic
chr2:203087740(-) A-I      intronic
chr2:203100373(-) A-I      intronic
chr2:203074229(-) A-I      intronic
chr2:203077611(-) A-I      intronic
chr2:203078102(-) A-I      intronic
chr2:203072962(-) A-I      intronic
chr2:203076827(-) A-I      intronic
chr2:203081596(-) A-I      intronic
chr2:203088746(-) A-I      intronic
chr2:203077827(-) A-I      intronic
chr2:203095628(-) A-I      intronic
chr2:203077792(-) A-I      intronic
chr2:203077822(-) A-I      intronic
chr2:203089617(-) A-I      intronic
chr2:203077840(-) A-I      intronic
chr2:203099090(-) A-I      intronic
chr2:203087756(-) A-I      intronic
chr2:203092068(-) A-I      intronic
chr2:203073823(-) A-I      intronic
chr2:203077127(-) A-I      intronic
chr2:203102036(-) A-I      intronic
chr2:203092203(-) A-I      intronic
chr2:203081747(-) A-I      intronic
chr2:203087668(-) A-I      intronic
chr2:203073892(-) A-I      intronic
chr2:203099682(-) A-I      intronic
chr2:203072560(-) A-I      intronic
chr2:203100751(-) A-I      intronic
chr2:203093303(-) A-I      intronic
chr2:203091741(-) A-I      intronic
chr2:203092222(-) A-I      intronic
chr2:203076815(-) A-I      intronic
chr2:203081732(-) A-I      intronic
chr2:203090151(-) A-I      intronic
chr2:203093794(-) A-I      intronic
chr2:203079894(-) A-I      intronic
chr2:203088311(-) A-I      intronic
chr2:203093263(-) A-I      intronic
chr2:203093800(-) A-I      intronic
chr2:203088128(-) A-I      intronic
chr2:203099085(-) A-I      intronic
chr2:203077632(-) A-I      intronic
chr2:203092134(-) A-I      intronic
chr2:203093372(-) A-I      intronic
chr2:203092928(-) A-I      intronic
chr2:203081531(-) A-I      intronic
chr2:203074490(-) A-I      intronic
chr2:203092056(-) A-I      intronic
chr2:203088203(-) A-I      intronic
chr2:203072583(-) A-I      intronic
chr2:203076609(-) A-I      intronic
chr2:203090107(-) A-I      intronic
chr2:203078124(-) A-I      intronic
chr2:203088889(-) A-I      intronic
chr2:203072472(-) A-I      intronic
chr2:203076783(-) A-I      intronic
chr2:203072453(-) A-I      intronic
chr2:203087819(-) A-I      intronic
chr2:203102023(-) A-I      intronic
chr2:203088077(-) A-I      intronic
chr2:203092069(-) A-I      intronic
chr2:203077117(-) A-I      intronic
chr2:203099769(-) A-I      intronic
chr2:203101854(-) A-I      intronic
chr2:203092708(-) A-I      intronic
chr2:203074434(-) A-I      intronic
chr2:203099089(-) A-I      intronic
chr2:203087620(-) A-I      intronic
chr2:203100427(-) A-I      intronic
chr2:203089692(-) A-I      intronic
chr2:203081555(-) A-I      intronic
chr2:203089456(-) A-I      intronic
chr2:203076570(-) A-I      intronic
chr2:203072570(-) A-I      intronic
chr2:203092842(-) A-I      intronic
chr2:203073864(-) A-I      intronic
chr2:203078065(-) A-I      intronic
chr2:203093450(-) A-I      intronic
chr2:203100804(-) A-I      intronic
chr2:203076801(-) A-I      intronic
chr2:203087805(-) A-I      intronic
chr2:203078128(-) A-I      intronic
chr2:203077036(-) A-I      intronic
chr2:203102040(-) A-I      intronic
chr2:203092623(-) A-I      intronic
chr2:203073862(-) A-I      intronic
chr2:203080774(-) A-I      intronic
chr2:203076580(-) A-I      intronic
chr2:203080544(-) A-I      intronic
chr2:203093902(-) A-I      intronic
chr2:203072699(-) A-I      Syn:Leu->Leu
chr2:203072705(-) A-I      Syn:Ala->Ala
chr2:203072605(-) A-I      NonSyn:Arg->Gly
chr2:203072704(-) A-I      NonSyn:Ile->Val
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SUMO1
chr2:203072570(-) A-G intron -    22484847
chr2:203076609(-) A-G intron -    22484847
chr2:203076827(-) A-G intron -    22484847
chr2:203080774(-) A-G intron -    22484847
chr2:203080791(-) A-G intron -    22484847
chr2:203081738(-) A-G intron -    22484847
chr2:203081747(-) A-G intron -    22484847
chr2:203088077(-) A-G intron -    22484847
chr2:203088128(-) A-G intron -    22484847
chr2:203088163(-) A-G intron -    22484847
chr2:203088203(-) A-G intron -    22484847
chr2:203089383(-) A-G intron -    22484847
chr2:203089666(-) A-G intron -    22484847
chr2:203089851(-) A-G intron -    22484847
chr2:203091658(-) A-G intron -    22484847
chr2:203091684(-) A-G intron -    22484847
chr2:203091741(-) A-G intron -    22484847
chr2:203092134(-) A-G intron -    22484847
chr2:203092158(-) A-G intron -    22484847
chr2:203092708(-) A-G intron -    22484847
chr2:203092842(-) A-G intron -    22484847
chr2:203092928(-) A-G intron -    22484847
chr2:203093263(-) A-G intron -    22484847
chr2:203093295(-) A-G intron -    22484847
chr2:203093303(-) A-G intron -    22484847
chr2:203093372(-) A-G intron -    22484847
chr2:203093450(-) A-G intron -    22484847
chr2:203099072(-) A-G intron -    22484847
chr2:203099089(-) A-G intron -    22484847
chr2:203099090(-) A-G intron -    22484847
chr2:203099411(-) A-G intron -    22484847
chr2:203099468(-) A-G intron -    22484847
chr2:203099820(-) A-G intron -    22484847
chr2:203100425(-) A-G intron -    22484847
chr2:203100504(-) A-G intron -    22484847
chr2:203100606(-) A-G intron -    22484847
chr2:203101952(-) A-G intron -    22484847
chr2:203102001(-) A-G intron -    22484847
chr2:203102023(-) A-G intron -    22484847
chr2:203102036(-) A-G intron -    22484847
chr2:203102040(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SUMO1
chr2:203071311-203071312(-) m6A 3'UTR       27773535
chr2:203071504-203071505(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:203071562-203071563(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:203071567-203071568(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:203071605-203071606(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr2:203071714-203071715(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr2:203072002-203072003(-) m6A 3'UTR//CDS//exon       27773535
chr2:203072624-203072625(-) m6A CDS//intron       27773535
chr2:203072647-203072648(-) m6A CDS//intron       27773535
chr2:203084757-203084758(-) m6A 3'UTR//5'UTR//CDS//exon//intron       27773535
chr2:203084772-203084773(-) m6A 3'UTR//5'UTR//CDS//exon//intron       27773535
chr2:203084806-203084807(-) m6A 3'UTR//5'UTR//CDS//exon//intron       27773535
chr2:203084820-203084821(-) m6A 5'UTR//CDS//exon//intron       27773535
chr2:203086537-203086538(-) m6A exon//intron       24981863//27773535
chr2:203086550-203086551(-) m6A exon//intron       24981863//27773535
chr2:203086595-203086596(-) m1A exon//intron       26863410//26863196
chr2:203098378-203098379(-) m6A 5'UTR//intron       24209618//24981863
chr2:203103198-203103199(-) m6A 5'UTR       24209618//24981863
chr2:203103244-203103245(-) m6A 5'UTR       24209618//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SUMO1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: sars-cov-2-mir-D10-5p
Interactor2: SUMO1

Evidence Support:


Prediction-Evidence miRanda//miRDB//Targetscan
Support Database ViRBase

References:


PMID 33398248 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Cytotoxin and gene regulation associated genes targeted by SARS-CoV-2 encoded miRNAs.

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