Basic Information:

  VIRBase ID:  

VHID00706135

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-3p:  MIMAT0006017          ATXN1L:  NM_001137675     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-3p	ATXN1L
miRBase Accession/Entrez ID	MIMAT0006017	342371
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BOAT//BOAT1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ATXN1L	chr16:71892629(+) A-I      intronic chr16:71892635(+) A-I      intronic chr16:71892610(+) A-I      intronic chr16:71907766(+) A-I      intronic chr16:71892567(+) A-I      intronic chr16:71892007(+) A-I      intronic chr16:71892283(+) A-I      intronic chr16:71892296(+) A-I      intronic chr16:71892075(+) A-I      intronic chr16:71892290(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ATXN1L	chr16:71892251(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ATXN1L	chr16:71881933-71881934(+) m6A 5'UTR//exon       24284625 chr16:71881968-71881969(+) m6A 5'UTR//exon       24284625 chr16:71882035-71882036(+) m6A exon//intron       24284625//24981863 chr16:71882040-71882041(+) m6A exon//intron       24284625//24981863 chr16:71882298-71882299(+) m6A exon//intron       - chr16:71883628-71883629(+) m6A 5'UTR//intron       24284625//24209618 chr16:71883648-71883649(+) m6A CDS//intron       24284625//24209618 chr16:71883695-71883696(+) m6A CDS//intron       24284625//24209618//24981863 chr16:71883727-71883728(+) m6A CDS//intron       24284625//24209618//24981863 chr16:71883872-71883873(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:71883930-71883931(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085 chr16:71884304-71884305(+) m6A CDS//intron       24284625//24209618//24981863 chr16:71884375-71884376(+) m6A CDS//intron       24284625//24209618//24981863//22575960//22608085 chr16:71884455-71884456(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr16:71884461-71884462(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr16:71884536-71884537(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr16:71884569-71884570(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr16:71884591-71884592(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:71884630-71884631(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:71884637-71884638(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:71884685-71884686(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:71884719-71884720(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:71884787-71884788(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:71884848-71884849(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:71884857-71884858(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:71884863-71884864(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:71884915-71884916(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:71884997-71884998(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:71885102-71885103(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:71885110-71885111(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:71885177-71885178(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:71885399-71885400(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:71885502-71885503(+) Cm CDS//intron       - chr16:71885713-71885714(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863 chr16:71885726-71885727(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863 chr16:71885732-71885733(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863 chr16:71885903-71885904(+) m6A 3'UTR//intron       24284625 chr16:71886204-71886205(+) m6A 3'UTR//intron       - chr16:71888680-71888681(+) m6A 3'UTR//intron       - chr16:71888736-71888737(+) m6A 3'UTR//intron       - chr16:71889482-71889483(+) m6A 3'UTR//intron       24981863 chr16:71889541-71889542(+) m6A 3'UTR//intron       24981863//27773535 chr16:71893696-71893697(+) m6A intron       - chr16:71893796-71893797(+) m6A intron       - chr16:71893822-71893823(+) m6A intron       - chr16:71894060-71894061(+) m6A intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ATXN1L	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus HeLa-S3 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hiv1-miR-TAR-3p	l-685,458       5479543 Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-3p
Interactor2: ATXN1L

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg