Detail Information

Basic Information:


  VIRBase ID:  

VHID00705957

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-3p:           MMS22L:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hiv1-miR-TAR-3p MMS22L
miRBase
Accession/Entrez ID		 MIMAT0006017 253714
Organism Human immunodeficiency virus 1 (HIV-1) Homo sapiens
Category miRNA mRNA
Alias - C6orf167//dJ39B17.2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MMS22L
chr6:97640702(-) A-I      intronic
chr6:97640657(-) A-I      intronic
chr6:97640660(-) A-I      intronic
chr6:97640680(-) A-I      intronic
chr6:97640664(-) A-I      intronic
chr6:97640654(-) A-I      intronic
chr6:97640675(-) A-I      intronic
chr6:97640650(-) A-I      intronic
chr6:97642460(-) A-I      intronic
chr6:97640640(-) A-I      intronic
chr6:97642403(-) A-I      intronic
chr6:97640686(-) A-I      intronic
chr6:97706035(-) A-I      intronic
chr6:97640669(-) A-I      intronic
chr6:97640693(-) A-I      intronic
chr6:97640662(-) A-I      intronic
chr6:97640677(-) A-I      intronic
chr6:97713703(-) A-I      intronic
chr6:97699715(-) A-I      intronic
chr6:97700372(-) A-I      intronic
chr6:97674370(-) A-I      intronic
chr6:97673359(-) A-I      intronic
chr6:97673364(-) A-I      intronic
chr6:97673351(-) A-I      intronic
chr6:97713762(-) A-I      intronic
chr6:97699792(-) A-I      intronic
chr6:97727658(-) A-I      intronic
chr6:97728387(-) A-I      intronic
chr6:97704711(-) A-I      intronic
chr6:97713831(-) A-I      intronic
chr6:97713842(-) A-I      intronic
chr6:97713863(-) A-I      intronic
chr6:97699770(-) A-I      intronic
chr6:97704698(-) A-I      intronic
chr6:97687746(-) A-I      intronic
chr6:97687573(-) A-I      intronic
chr6:97687555(-) A-I      intronic
chr6:97727539(-) A-I      intronic
chr6:97674387(-) A-I      intronic
chr6:97727541(-) A-I      intronic
chr6:97727579(-) A-I      intronic
chr6:97699716(-) A-I      intronic
chr6:97728471(-) A-I      intronic
chr6:97728388(-) A-I      intronic
chr6:97728385(-) A-I      intronic
chr6:97728384(-) A-I      intronic
chr6:97728347(-) A-I      intronic
chr6:97728346(-) A-I      intronic
chr6:97727273(-) A-I      intronic
chr6:97728301(-) A-I      intronic
chr6:97652892(-) A-I      intronic
chr6:97725140(-) A-I      intronic
chr6:97700421(-) A-I      intronic
chr6:97687532(-) A-I      intronic
chr6:97713713(-) A-I      intronic
chr6:97673365(-) A-I      intronic
chr6:97704582(-) A-I      intronic
chr6:97642166(-) A-I      intronic
chr6:97705511(-) A-I      intronic
chr6:97704824(-) A-I      intronic
chr6:97710505(-) A-I      intronic
chr6:97727096(-) A-I      intronic
chr6:97674457(-) A-I      intronic
chr6:97704809(-) A-I      intronic
chr6:97704609(-) A-I      intronic
chr6:97699837(-) A-I      intronic
chr6:97652471(-) A-I      intronic
chr6:97704816(-) A-I      intronic
chr6:97700399(-) A-I      intronic
chr6:97652885(-) A-I      intronic
chr6:97687730(-) A-I      intronic
chr6:97705553(-) A-I      intronic
chr6:97727238(-) A-I      intronic
chr6:97665334(-) A-I      intronic
chr6:97687700(-) A-I      intronic
chr6:97687781(-) A-I      intronic
chr6:97728463(-) A-I      intronic
chr6:97700409(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MMS22L
chr6:97590412-97590413(-) m6A 3'UTR       27773535
chr6:97590444-97590445(-) m6A 3'UTR       27773535
chr6:97590464-97590465(-) m6A 3'UTR       27773535
chr6:97590495-97590496(-) m6A 3'UTR       27773535
chr6:97590554-97590555(-) m6A 3'UTR       27773535
chr6:97590667-97590668(-) m6A 3'UTR       27773535
chr6:97590695-97590696(-) m6A 3'UTR       27773535
chr6:97634518-97634519(-) m6A CDS       24284625//27773535//22608085
chr6:97634527-97634528(-) m6A CDS       24284625//27773535//22608085
chr6:97634538-97634539(-) m6A CDS       24284625//27773535//22608085
chr6:97676809-97676810(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536//22575960//22608085
chr6:97676816-97676817(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536//22575960//22608085
chr6:97676867-97676868(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr6:97676899-97676900(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr6:97676944-97676945(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:97676957-97676958(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:97677048-97677049(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr6:97677150-97677151(-) m6A CDS       24284625//27773535//22608085
chr6:97677219-97677220(-) m6A CDS       24284625//27773535//22608085
chr6:97677242-97677243(-) m6A CDS       24284625//27773535//22608085
chr6:97678186-97678187(-) m6A 3'UTR//intron       22608085
chr6:97678196-97678197(-) m6A 3'UTR//intron       22608085
chr6:97702598-97702599(-) m6A 3'UTR//CDS//exon       27773535
chr6:97706564-97706565(-) m6A exon//intron       27773535
chr6:97706569-97706570(-) m6A exon//intron       27773535
chr6:97706664-97706665(-) m6A exon//intron       27773535
chr6:97706768-97706769(-) m6A exon//intron       27773535
chr6:97706776-97706777(-) m6A exon//intron       27773535
chr6:97707221-97707222(-) m6A exon//intron       27773535
chr6:97707231-97707232(-) m6A exon//intron       27773535
chr6:97707340-97707341(-) m6A exon//intron       -
chr6:97707884-97707885(-) m6A exon//intron       24284625//27773535//22608085
chr6:97707904-97707905(-) m6A exon//intron       24284625//27773535//22608085
chr6:97707941-97707942(-) m6A exon//intron       24284625//27773535//22608085
chr6:97707946-97707947(-) m6A exon//intron       24284625//27773535//22608085
chr6:97707985-97707986(-) m6A exon//intron       24284625//27773535//22608085
chr6:97708000-97708001(-) m6A exon//intron       24284625//27773535//22608085
chr6:97708015-97708016(-) m6A exon//intron       24284625//27773535//22608085
chr6:97708103-97708104(-) m6A exon//intron       27773535//22608085
chr6:97708119-97708120(-) m6A exon//intron       27773535//22608085
chr6:97708145-97708146(-) m6A exon//intron       27773535//22608085
chr6:97708259-97708260(-) m6A exon//intron       27773535//22608085
chr6:97708303-97708304(-) m6A exon//intron       27773535//22608085
chr6:97708405-97708406(-) m6A exon//intron       27773535//22608085
chr6:97708412-97708413(-) m6A exon//intron       27773535//22608085
chr6:97708420-97708421(-) m6A exon//intron       27773535//22608085
chr6:97708451-97708452(-) m6A exon//intron       27773535//22608085
chr6:97708474-97708475(-) m6A exon//intron       27773535//22608085
chr6:97708513-97708514(-) m6A exon//intron       27773535//22608085
chr6:97708522-97708523(-) m6A exon//intron       27773535//22608085
chr6:97708533-97708534(-) m6A exon//intron       27773535//22608085
chr6:97708578-97708579(-) m6A exon//intron       27773535//22608085
chr6:97708593-97708594(-) m6A exon//intron       27773535//22608085
chr6:97708603-97708604(-) m6A exon//intron       27773535//22608085
chr6:97708608-97708609(-) m6A exon//intron       27773535//22608085
chr6:97708691-97708692(-) m6A exon//intron       25456834//27773535//22608085
chr6:97708761-97708762(-) m6A exon//intron       24284625//27773535//22608085
chr6:97708793-97708794(-) m6A exon//intron       24284625//27773535//22608085
chr6:97708913-97708914(-) m6A exon//intron       27773535//27371828//22608085
chr6:97708928-97708929(-) m6A exon//intron       24284625//27773535//27371828//22608085
chr6:97708990-97708991(-) m6A exon//intron       24284625//24981863//27773535//27371828//22608085
chr6:97709008-97709009(-) m6A exon//intron       24284625//24981863//27773535//27371828//22608085
chr6:97709025-97709026(-) m6A exon//intron       24981863//22608085
chr6:97709080-97709081(-) m6A exon//intron       22608085
chr6:97709087-97709088(-) m6A exon//intron       22608085
chr6:97709359-97709360(-) m6A exon//intron       27773535
chr6:97709384-97709385(-) m6A exon//intron       27773535//22608085
chr6:97709431-97709432(-) m6A exon//intron       27773535//22608085
chr6:97709481-97709482(-) m6A exon//intron       27773535//22608085
chr6:97709511-97709512(-) m6A exon//intron       24284625//27773535//22608085
chr6:97709562-97709563(-) m6A exon//intron       24284625//24209618//27773535//22608085
chr6:97709598-97709599(-) m6A exon//intron       24284625//24209618//27773535//22608085
chr6:97709637-97709638(-) m6A exon//intron       24284625//24209618//27773535//22608085
chr6:97709714-97709715(-) m6A exon//intron       27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MMS22L
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug hiv1-miR-TAR-3p
l-685,458       5479543
Pha-665752       10461815

Interaction Network (The top 100 interactions):


Interactor1: hiv1-miR-TAR-3p
Interactor2: MMS22L

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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