Basic Information:

  VIRBase ID:  

VHID00705885

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-3p:  MIMAT0006017          SLC36A1:  NM_001349740     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-3p	SLC36A1
miRBase Accession/Entrez ID	MIMAT0006017	206358
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Dct1//LYAAT1//PAT1//TRAMD3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC36A1	chr5:150847734(+) A-I      intronic chr5:150834413(+) A-I      intronic chr5:150834403(+) A-I      intronic chr5:150834391(+) A-I      intronic chr5:150830848(+) A-I      intronic chr5:150832602(+) A-I      intronic chr5:150868835(+) A-I      3'UTR chr5:150832221(+) A-I      intronic chr5:150834458(+) A-I      intronic chr5:150832622(+) A-I      intronic chr5:150834439(+) A-I      intronic chr5:150832201(+) A-I      intronic chr5:150830852(+) A-I      intronic chr5:150832189(+) A-I      intronic chr5:150834449(+) A-I      intronic chr5:150832311(+) A-I      intronic chr5:150837671(+) A-I      intronic chr5:150832598(+) A-I      intronic chr5:150837592(+) A-I      intronic chr5:150832310(+) A-I      intronic chr5:150832174(+) A-I      intronic chr5:150837609(+) A-I      intronic chr5:150835805(+) A-I      intronic chr5:150862417(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SLC36A1	chr5:150832310(+) A-G intron -    22484847 chr5:150832311(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC36A1	chr5:150816713-150816714(+) m6A 5'UTR       24981863 chr5:150827219-150827220(+) m6A 5'UTR//intron       24981863 chr5:150827275-150827276(+) m6A 5'UTR//intron       24981863 chr5:150827335-150827336(+) m6A 5'UTR//intron       - chr5:150859014-150859015(+) m6A 3'UTR//CDS       24284625 chr5:150867737-150867738(+) m6A 3'UTR//CDS       24981863 chr5:150868063-150868064(+) m6A 3'UTR       24981863 chr5:150868544-150868545(+) m6A 3'UTR       24981863 chr5:150868590-150868591(+) m6A 3'UTR       24981863 chr5:150868667-150868668(+) m6A 3'UTR       25456834//24981863//22608085 chr5:150868763-150868764(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr5:150868773-150868774(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr5:150868995-150868996(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr5:150869065-150869066(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr5:150869101-150869102(+) m6A 3'UTR       24284625//24981863//22608085 chr5:150869113-150869114(+) m6A 3'UTR       24284625//24981863//22608085 chr5:150869122-150869123(+) m6A 3'UTR       24284625//24981863//22608085 chr5:150869175-150869176(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC36A1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hiv1-miR-TAR-3p	l-685,458       5479543 Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-3p
Interactor2: SLC36A1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg