Basic Information:

  VIRBase ID:  

VHID00705459

  Virus:  

Human immunodeficiency virus 1 (HIV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hiv1-miR-TAR-3p:  MIMAT0006017          FOXN4:  NM_213596     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hiv1-miR-TAR-3p	FOXN4
miRBase Accession/Entrez ID	MIMAT0006017	121643
Organism	Human immunodeficiency virus 1 (HIV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FOXN4	chr12:109731427(-) A-I      intronic chr12:109733425(-) A-I      intronic chr12:109738496(-) A-I      intronic chr12:109736350(-) A-I      intronic chr12:109736305(-) A-I      intronic chr12:109736304(-) A-I      intronic chr12:109736298(-) A-I      intronic chr12:109731431(-) A-I      intronic chr12:109720191(-) A-I      intronic chr12:109741811(-) A-I      intronic chr12:109741874(-) A-I      intronic chr12:109735242(-) A-I      intronic chr12:109735243(-) A-I      intronic chr12:109720034(-) A-I      intronic chr12:109720055(-) A-I      intronic chr12:109735248(-) A-I      intronic chr12:109735331(-) A-I      intronic chr12:109720253(-) A-I      intronic chr12:109736361(-) A-I      intronic chr12:109721333(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FOXN4	chr12:109715834-109715835(-) m6A 3'UTR       27773535 chr12:109715858-109715859(-) m6A 3'UTR       27773535 chr12:109715874-109715875(-) m6A 3'UTR       27773535 chr12:109715951-109715952(-) m6A 3'UTR       27773535 chr12:109715980-109715981(-) m6A 3'UTR       27773535 chr12:109716588-109716589(-) m6A 3'UTR       27773535 chr12:109716613-109716614(-) m6A 3'UTR       27773535 chr12:109716640-109716641(-) m6A 3'UTR       27773535 chr12:109716746-109716747(-) m6A 3'UTR       27773535 chr12:109716772-109716773(-) m6A 3'UTR       27773535 chr12:109716928-109716929(-) m6A 3'UTR       24284625//25456834//22608085 chr12:109716937-109716938(-) m6A 3'UTR       24284625//25456834//22608085 chr12:109716942-109716943(-) m6A 3'UTR       24284625//25456834//22608085 chr12:109716993-109716994(-) m6A 3'UTR       24284625//25456834//27773535//22608085 chr12:109717016-109717017(-) m6A 3'UTR       24284625//25456834//27773535//22608085 chr12:109717074-109717075(-) m6A 3'UTR       24284625//25456834//24981863//22608085 chr12:109717095-109717096(-) m6A 3'UTR       24284625//25456834//24981863//22608085 chr12:109717152-109717153(-) m6A 3'UTR//CDS       24284625//25456834//24981863//22608085 chr12:109717229-109717230(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773536//22608085 chr12:109717338-109717339(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773536//22608085 chr12:109717362-109717363(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773536//22608085 chr12:109717414-109717415(-) m6A 3'UTR//intron       24284625//25456834//27773536//22608085 chr12:109717424-109717425(-) m6A 3'UTR//intron       24284625//25456834//27773536//22608085 chr12:109717450-109717451(-) m6A 3'UTR//intron       24284625//25456834//27773536//22608085 chr12:109717497-109717498(-) m6A CDS//intron       24284625 chr12:109717554-109717555(-) m6A CDS//intron       24284625 chr12:109717596-109717597(-) m6A 3'UTR//CDS//intron       24284625 chr12:109717671-109717672(-) m6A 3'UTR//CDS//intron       25456834 chr12:109717692-109717693(-) m6A 3'UTR//CDS//intron       25456834 chr12:109717731-109717732(-) m6A 3'UTR//CDS//intron       25456834 chr12:109719225-109719226(-) m6A 3'UTR//CDS//intron       25456834 chr12:109719261-109719262(-) m6A 3'UTR//CDS//intron       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FOXN4	Exosome Blood     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hiv1-miR-TAR-3p	l-685,458       5479543 Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: hiv1-miR-TAR-3p
Interactor2: FOXN4

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg